Issues · vidjil / vidjil

New issue

chasse aux pixels

#923 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-ergonomy client-less-css priority-1-low
- CLOSED
- 0
updated Nov 20, 2018
Traitement des options : supprimer docopt, choisir autre solution

#926 · opened Nov 29, 2016 by Vidjil Team Algo 2017.11 !-hard cpp cpp-compiler cpp-options priority-1-low
- CLOSED
- 1
- 8
updated Oct 19, 2017
lisibilité du graphique

#927 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-graph priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
vidjil.cpp: rationaliser les options -% -R -z... et -r

#928 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-options priority-5-today
- CLOSED
- 0
updated Jan 26, 2017
vidjil.cpp: .json doit avoir les même limites que stdout

#929 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp priority-1-low
- CLOSED
- 1
updated Sep 12, 2017
Algo multi-systèmes 1.5 : intégrer un objet Germline

#930 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
définir l'objet Germline, MultiGermline

#931 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
à parser depuis germline.data

#932 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
AffectAnalyzer prend un MultiGermline, coeur de l'heuristique

#933 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
AffectAnalyzer renvoie l'info du Germline choisi

#934 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
FineSegmenter considère le bon Germline

#935 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
FineSegmenter prend un Germline

#936 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
MultiGermline passé de vidjil.cpp à segmenter.cpp

#937 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
réparer les tests unitaires :)

#938 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
Le Germline choisi est transféré à vidjil.cpp

#939 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
faire aussi CMD_GERMLINES avec le MultiGermline

#940 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important *-go bio-germlines cpp cpp-heuristic feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
germlines: souris

#941 · opened Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker bio-germlines bio-species priority-5-today
- CLOSED
- 0
updated Jan 24, 2017
Tableur / tables plus dynamiques

#944 · opened Nov 29, 2016 by Vidjil Team !-reflexion client feature server-speed
- CLOSED (MOVED)
- 4
updated Apr 17, 2019
pseudo-germlines

#945 · opened Nov 29, 2016 by Vidjil Team old_tracker LIL-Lille PAN-Necker bio-germlines priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
champs pcr/sequencer/producer pour sequence file

#946 · opened Nov 29, 2016 by Vidjil Team old_tracker client-autocomplete priority-4-week server-database
- CLOSED
- 0
updated Oct 10, 2017
ajouter les champs a la bdd

#947 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week server-database sub
- CLOSED
- 0
updated Nov 29, 2016
ajouter une liste de sugestion/autocompletion

#948 · opened Nov 29, 2016 by Vidjil Team old_tracker client-autocomplete priority-4-week server-database sub
- CLOSED
- 0
updated Oct 10, 2017
Format commun et universel (.vdj, .json, .xml ?)

#949 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion repseq-Nikos repseq-community repseq-standardization
- CLOSED
- 1
updated Nov 20, 2018
.vdj : inclure (IMGT-)CDR3 ?

#950 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion cpp priority-1-low repseq-standardization
- CLOSED
- 0
updated Nov 29, 2016
Release 2014-07

#951 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
algo: Release 2014-09

#952 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
C++: un module AA qui détecte ce qu'il faut (position + traduction), appelé quand on FineSegmenter

#954 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
récupérer les infos depuis le .vidjil

#955 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
js: afficher les bornes Cys et Phe/Trp (sur la séquence nucl dans le segmenter)

#956 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
upgrader le fuse.py pour le faire depuis le .clntab

#958 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
Jenkins : intégration continue pour les tests browser

#959 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
read (voir dump db)

#961 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-2 server sub
- CLOSED
- 0
updated Dec 11, 2020
read/write (restocker les .analysis ?)

#962 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-2 server sub
- CLOSED
- 0
updated Dec 11, 2020
switch module Vojtech

#963 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague priority-5-today repseq-Nikos
- CLOSED
- 0
updated Nov 29, 2016
less.css, servi par Apache ? versionné ?

#964 · opened Nov 29, 2016 by Vidjil Team old_tracker client-less-css priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
package Vidjil autonome: data exemple, germlines ?

#966 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Antonin : refaire marcher dbscan en javascript

#967 · opened Nov 29, 2016 by Vidjil Team old_tracker client cpp priority-2 server-fuse
- CLOSED
- 1
updated Apr 09, 2018
parser .clntab: trouver mieux que -x/-y/-z

#968 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-3-month repseq-Nikos repseq-community server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Align : lettres décalées

#969 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client client-aligner priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Export pdf avec scientifique au lieu de %

#970 · opened Nov 29, 2016 by Vidjil Team old_tracker REN-Rennes client-export priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
segmenter : igBlastSegmenter / IMGTSegmenter

#972 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-aligner com priority-5-today repseq-community
- CLOSED
- 0
updated Nov 29, 2016
Pointer address in windows.fa

#974 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-2
- CLOSED
- 0
updated Nov 29, 2016
Affichage de l'affect analyser ne correspondant pas à la réalité ?

#975 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Séquences segmentées mais fenêtres non trouvées (J trop court)

#976 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-analyze-more bio-control cpp cpp-heuristic priority-2
- CLOSED
- 1
updated Nov 20, 2018
diagnostic sur toutes nos séquences

#977 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-analyze-more bio-control cpp cpp-heuristic priority-2 sub
- CLOSED
- 0
updated Nov 20, 2018
segmenter.cpp: séparer UNSEG_strand en deux cas (vraiment pas beaucoup d'affect ou pas)

#978 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 21, 2019
merger affect_heuristic / online_affect

#979 · opened Nov 29, 2016 by Vidjil Team old_tracker !-important bio-analyze-more cpp-heuristic priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
revérifier la vitesse (une fois qu'on aura déjà viré FineSegmenter), tests TRG : bof, finalement pas la peine

#980 · opened Nov 29, 2016 by Vidjil Team old_tracker !-important bio-analyze-more cpp-heuristic priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
alertes à l'utilisateur en fonction de certaines raisons de non-segmentation

#981 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control client client-warning cpp-heuristic priority-1-low
- CLOSED
- 1
updated Nov 20, 2018
revoir download controller

#982 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server
- CLOSED
- 1
updated Dec 11, 2020
Fusionner plusieurs germline avec fuse.py

#983 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-germlines priority-1-low server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Erreur de substr sur Del-88-DD

#984 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
trouver le bug : dans la segmentation d'un clone

#985 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-4-week sub
- CLOSED
- 0
updated Nov 29, 2016
faire que rattraper exceptions fonctionne

#986 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-4-week sub
- CLOSED
- 0
updated Nov 29, 2016
Séparer les "smaller clones" par locus

#989 · opened Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker bio-germlines client cpp priority-4-week server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Séparer le clone virtuel "other" en plusieurs paquets

#990 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard client client-export client-graph client-virtual-clone com-paper priority-2 repseq-Nikos server-fuse
- CLOSED
- 2
updated Oct 29, 2019
Déselection des clones dans l'aligneur

#991 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-aligner priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Surligner la ligne survolée dans l'aligneur

#992 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-aligner feature priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Label de la checkbox normalization pas mis à jour lorsqu'on change de jeu de données

#993 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-control client client-normalization priority-2
- CLOSED
- 0
updated Apr 03, 2017
Test navigateur ne passe plus

#994 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client dev-tests priority-2
- CLOSED
- 0
updated Nov 29, 2016
Arrêter de produire les fichiers seq/windows.fa-*

#995 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp priority-2
- CLOSED
- 0
updated Nov 29, 2016
Séquences manquantes

#997 · opened Nov 29, 2016 by Vidjil Team old_tracker client feature priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Comparer plusieurs samples : log-log

#998 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important !-reflexion *-too-vague client client-log-log feature priority-3-month
- CLOSED
- 0
updated Mar 21, 2019
Alignement de la police monospace

#999 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-2
- CLOSED
- 0
updated Nov 29, 2016
Align puis ajout autre seqs: complètement décalées

#1001 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
dynprog: Gotoh / gaps multiples

#1002 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-dynprog priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
dynprog: refactorer, nettoyer

#1003 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important cpp-dynprog cpp-finesegmenter priority-2
- CLOSED
- 0
updated Nov 29, 2016
interesting substrings: si on colle des morceaux, peut-être mettre un tiret entre

#1005 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Voir le résultat de -c germlines dans le browser

#1011 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague bio-control bio-germlines client cpp priority-5-today server server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Alerte "attention, vos changements vont être perdus"

#1014 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Épaisseur de la police

#1015 · opened Nov 29, 2016 by Vidjil Team client client-design client-ergonomy client-less-css priority-1-low
- CLOSED
- 0
updated Nov 15, 2017
Légende des points si trop de points

#1016 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-graph priority-1-low
- CLOSED
- 1
updated Dec 11, 2020
Renommage des clones, des times points : on devrait pouvoir valider par [Entrée]

#1018 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Vue admin, monitor

#1019 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client priority-3-month server server-admin
- CLOSED
- 0
updated Nov 29, 2016
Rentrer des .clntab directement dans le browser

#1021 · opened Nov 29, 2016 by Vidjil Team old_tracker feature priority-3-month repseq-Nikos repseq-community server server-database server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Légende du scatterplot pour le multi-système

#1022 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines client client-grid priority-2
- CLOSED
- 0
updated Nov 29, 2016
ordre des timepoints dans la fenetre d'info

#1023 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-2
- CLOSED
- 0
updated Nov 29, 2016
export pdf - multisystèmes

#1024 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug !-reflexion client client-export priority-2
- CLOSED
- 0
updated Nov 29, 2016
Batch upload d'un ensemble de runs : se souvenir des derniers paramètres

#1028 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client client-ergonomy priority-2 server
- CLOSED
- 0
updated Nov 29, 2016
Jenkins: job de test rapide

#1031 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
export pdf: améliorer les courbes pour inclusion dans l'article

#1032 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
key des pourcentage bien centrée en y

#1033 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
légende dans ou à côté de la courbe ? (ou mini-courbe, à discuter ?)

#1034 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
sortie uniquement la courbe, avec une bonne BoundingBox (on peut couper dans le .pdf mais ce n'est pas très propre)

#1035 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
passe en noir et blanc (pas important pour l'instant)

#1036 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
labels plus gros

#1037 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
afficher les systèmes sélectionnés (en fait un seul : TRG ou IGH), mais il pourriat y en avoir plus

#1038 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
certaines courbes en gras ne devraient pas l'être (Leu/IGH)

#1039 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
grille trop visible

#1040 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export client-graph com-paper priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
Organisation de la doc

#1042 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Stats sur les clones sélectionnés

#1043 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client client-ergonomy feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
afficher "7 clones (54554 reads, 31.2%)"

#1044 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client client-ergonomy feature priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
Récupérer l'exception si conf.js spécifie des fichiers inexistants

#1045 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-1-low
- CLOSED
- 2
updated Oct 19, 2018
Désélectionner un analysis_file dans le 'import analysis'

#1047 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Stats sur le jeu complet dans le fichier .vidjil / smaller clones

#1048 · opened Nov 29, 2016 by Vidjil Team !-hard !-reflexion client client-axis client-bar client-virtual-clone cpp cpp-finesegmenter feature priority-2 repseq-Nikos repseq-formats
- CLOSED
- 1
- 3
updated Oct 29, 2019
Ne pas afficher toutes les courbes dans le graphe

#1049 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-graph priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Germline TRB ne fonctionne pas dans la version actuelle

#1050 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Ne pas limiter le nombre de clones sélectionnés

#1051 · opened Nov 29, 2016 by Vidjil Team old_tracker client-aligner client-grid feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sélection de tous les clones Vx-Jy sur le scatterplot

#1052 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy client-grid feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Centrer verticalement les labels des ordonnées dans le PDF

#1059 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-export com-paper priority-2
- CLOSED
- 0
updated May 07, 2020