Issues · vidjil / vidjil · GitLab

Alignement : la séquence majoritaire n'est plus la première affichée

#1306 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-aligner priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Anonymisation des données 'cheap', côté client

#1308 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go client client-ergonomy priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Permissions et groupes

#1321 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week server-database server-groups
- CLOSED
- 0
updated Jan 31, 2017
En cas d'absence de fichier de config, la fenêtre de bienvenue ne s'affiche pas.

#1329 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Anonymisation : quand un patient est créé, l'uploader doit avoir le droit "anon"

#1342 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug #-privacy *-go priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
L'onglet "users" ne fonctionne plus sur rbx

#1347 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week server-admin
- CLOSED
- 0
updated Nov 29, 2016
Point non montré

#1349 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-4-week server server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Axes lors de la normalisation

#1355 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-normalization priority-4-week
- CLOSED
- 0
updated Apr 03, 2017
Heuristique multi-systèmes 1.9, marquer les k-mers ambigus entre plusieurs systèmes

#1365 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
scatterplot : longueur du CDR3 (nucl et AA) comme axe d'analyse

#1373 · opened Nov 29, 2016 by Vidjil Team old_tracker !-important *-go LIL-Lille PAN-Necker bio-AA client-grid feature priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
export html: remplir le div="header-title"

#1381 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
export html: version de Vidjil (et command line / run date)

#1383 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-export cpp priority-4-week server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Compare patients : debug

#1388 · opened Nov 29, 2016 by Vidjil Team old_tracker REN-Rennes dev-robust priority-4-week server-compare-samples
- CLOSED
- 0
updated Nov 29, 2016
IKmerStore:remove()

#1391 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Heuristique 1.9b : tester toutes les germlines, renvoyer la meilleure

#1397 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
sur Chrome, la database patient ne s'ouvre pas

#1416 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
algo: Release 2015-03

#1420 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
scatterplot : longueur de la séquence comme axe d'analyse

#1421 · opened Nov 29, 2016 by Vidjil Team old_tracker client-bar priority-4-week
- CLOSED
- 0
updated Mar 11, 2017
axis: reverse flexible, sur X mais pas sur Y

#1423 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Remplacer sqlite par autre chose ?

#1425 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion dev-robust priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
Transition sqlite > MySQL ?

#1426 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
tester chez Marc, sur le serveur de dev, avant la migration de la prod

#1427 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
- CLOSED
- 0
updated Nov 29, 2016
remettre en place un mécanisme de sauvegarde

#1428 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
- CLOSED
- 0
updated Nov 29, 2016
ce serait l'occasion de tester la restauration de la DB à partir de sauvegarde

#1429 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
- CLOSED
- 0
updated Nov 29, 2016
Tests fonctionnels pour fuse.py

#1439 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-4-week server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Être prévenu dès qu'un processus est FAILED

#1440 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week server server-admin
- CLOSED
- 0
updated Nov 29, 2016
javascript, modularisation + main.js

#1462 · opened Nov 29, 2016 by Vidjil Team old_tracker client dev-robust priority-4-week repseq-Nikos
- CLOSED
- 0
updated Nov 29, 2016
Le fichier de conf du browser est devenu obligatoire. Vraiment ?

#1467 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week server-config
- CLOSED
- 0
updated Nov 29, 2016
Représentative : mesure de qualité

#1468 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control cpp-representative priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Le nombre de fichiers affiché sur le serveur est un multiple de 334

#1487 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Mettre en prod les tests server

#1488 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-policy priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
P-value / E-value du segmenter (nb de k-mers gauche + droite)

#1493 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Avec FF37, problèmes de chargement complet du browser

#1531 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-graph client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection par colonne/ligne : '?' sélectionne trop de choses

#1532 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection par colonne/ligne et clone 'other'

#1533 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-too-vague client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
impersonate

#1536 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week server server-admin server-auth
- CLOSED
- 0
updated Jan 31, 2017
Résultat bizarre sur R1/R2

#1545 · opened Nov 29, 2016 by Vidjil Team old_tracker !-important REN-Rennes feature priority-4-week server server-pre-process
- CLOSED
- 0
updated Dec 08, 2016
Problème de D7-J1 en complémentaire

#1548 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug REN-Rennes cpp-heuristic priority-4-week
- CLOSED
- 0
updated Mar 09, 2017
Une représentative, plusieurs clones

#1552 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug LIL-Lille cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Merger voodooj, option '-t'

#1570 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
algo: release 2015.05

#1571 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
top n'affiche pas le nombre de clones attendu

#1603 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection IJD

#1613 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Dans le browser, cluster by ne fonctionne plus

#1625 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Suppression des résultats et mise à jour des fichiers fused

#1631 · opened Nov 29, 2016 by Vidjil Team Web 2017.05 !!-bug +-merge client-database priority-4-week server server-database server-fuse server-sample-sets
- CLOSED
- 1
- 8
updated May 23, 2017
Quand la séquence n'a pas de segmentation, elle n'a aucun nom

#1646 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
annotations: clic sur nom du patient

#1683 · opened Nov 29, 2016 by Vidjil Team old_tracker !-important !-reflexion client feature priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
un D dans le .vidjil alors qu'il n'y en a pas

#1685 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Test should-vdj sur IGK+

#1688 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-tests dev-tests-curated-vdj priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Transformer tests/segment_lec.should_get en test should-vdj (TRG)

#1690 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-tests dev-tests-curated-vdj priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
fuse.py plante s'il n'y a pas de clone.

#1713 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Export fasta : mettre la taille en bp

#1747 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client client-export priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Vérifier 783d0b1, plus de reads en AMBIGUOUS

#1758 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
BJH, .doc

#1774 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
xxx problème dans le nommage de certains clones

#1779 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go bio-germlines-pseudo client cpp-dynprog cpp-heuristic priority-4-week
- CLOSED
- 0
updated Feb 04, 2017
make unit_browser est cassé : germline.js / germline.data

#1796 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines dev-tests priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Avoir une interface pour le FineSegmenter d'un petit nombre de clones

#1797 · opened Nov 29, 2016 by Vidjil Team old_tracker app-analyze client client-aligner cpp-finesegmenter feature priority-4-week
- CLOSED
- 1
updated Feb 02, 2017
annotations : Quand il n'y a qu'un point, on ne voit pas les infos du sample

#1820 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
annotations: cela bouge toujours un peu quand on édite les infos du patient

#1821 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
CDR3: affichage dans le browser

#1823 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter, close: informations sur le lancement de MiXCR

#1833 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week repseq-mixcr repseq-platform
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter, putReads : gestion des locus

#1835 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
VidjilInfoWriter: "total" doit être le nombre de reads d'entrée

#1839 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
VDJ-IMGT : trouver le nom

#1854 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Segmenter : souligné CD3-IMGT disparaît au survol

#1855 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-aligner priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
liste de locus : faire mieux

#1861 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-ugly priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Menu 'patient' : open, save

#1862 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Souris IGH Limoges

#1865 · opened Nov 29, 2016 by Vidjil Team old_tracker LIM-Limoges bio-species priority-4-week
- CLOSED
- 0
updated Jan 24, 2017
Ellipsis à faire sur les titres des samples dans le graphe (ça dépasse et c'est moche)

#1892 · opened Nov 29, 2016 by Vidjil Team old_tracker client-ugly priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
/mnt/data-rby ne répond pas

#1902 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Le log est celui d'analysis et pas celui du fuse

#1903 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week repseq-formats server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Suppression et modification impossible des patients sur rbx

#1907 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-database priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
Suppression de patients : mauvais nombre de fichier indiqué

#1908 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
representative-N.should-get

#1937 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Lorsque une partie des fichiers est runné, des métadata des mauvais fichiers sont affichés

#1940 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug BRU-Bruxelles priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Erreurs serveurs dans les runs

#1946 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Bug indéterminé sur la vue d'un sample set

#1953 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week server-sample-sets
- CLOSED
- 0
updated Mar 14, 2017
Les identifiants de clones ne sont pas uniques pour MiXCR

#1955 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion priority-4-week repseq-mixcr server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Compare samples ne fonctionne pas pour un run

#1957 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server-database server-sample-sets
- CLOSED
- 0
updated Mar 14, 2017
Repasser en -t 0 par défaut au lieu de -t 100 (trim)

#1967 · opened Nov 29, 2016 by Vidjil Team bio-trim priority-4-week
- CLOSED
- 0
updated Oct 31, 2017
Release 2016.09

#1991 · opened Nov 29, 2016 by Vidjil Team old_tracker com cpp priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Jenkins et SHOULD_*_EXPECTED_FAILS

#1999 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-build dev-tests priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Un mauvais commit traine dans dev, à rebaser

#2013 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 1
updated Feb 01, 2017
Color by clone

#2205 · opened Mar 01, 2017 by Mathieu Giraud Web 2017.03 PAN-Necker PAR-Debré client client-axis client-bar feature priority-4-week
- CLOSED
- 0
updated Mar 22, 2017