Issues · vidjil / vidjil

New issue

Axes : tag, locus ?

#1472 · created Nov 29, 2016 by Vidjil Team old_tracker client-axis feature priority-2
- CLOSED
- 0
updated Nov 29, 2016
align colore parfois les mauvaises bases comme étant des mutations

#1474 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-aligner priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sablier / indicateur quand on attend le résultat d'une requête de la DB

#1476 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy dev-robust priority-2 server-database
- CLOSED
- 1
updated Dec 16, 2016
Voir les séquences germlines

#1477 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control bio-germlines client-export feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Afficher le "% coverage" comme axe d'analyse

#1478 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Dans le c++, sortir cette info en nombre

#1479 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
Vérifier qu'elle passe au fuse

#1480 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
L'afficher dans le browser

#1481 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
Export fasta : une idée de la segmentation avec des retours à la ligne

#1484 · created Nov 29, 2016 by Vidjil Team old_tracker client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
BCL1 / JH

#1486 · created Nov 29, 2016 by Vidjil Team old_tracker REN-Rennes bio-germlines priority-3-month
- 0
updated Nov 29, 2016
Le nombre de fichiers affiché sur le serveur est un multiple de 334

#1487 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Mettre en prod les tests server

#1488 · created Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-policy priority-4-week server
- CLOSED
- 0
updated Nov 29, 2016
Les propriétaires des patients ne voient plus le nom complet dans la liste des patients

#1489 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today server-database
- CLOSED
- 0
updated Nov 29, 2016
P-value / E-value du segmenter (nb de k-mers gauche + droite)

#1493 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
E-value, multiplier par le nombre de reads

#1494 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
avoir une version plus heuristique de nb_sequences_in_fasta

#1495 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
Valgrind: avoir la raison d'un build loupé dans le mail

#1496 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-ci priority-1-low wont-fix
- CLOSED
- 1
updated Dec 11, 2020
Valgrind: lancer sur meccano avant de lancer sur tout le monde

#1497 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-ci priority-2
- CLOSED
- 0
updated Nov 29, 2016
nb_sequences_in_fasta : pareil en heuristique

#1498 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
On n'arrive pas à visualiser des .data quand il manque des fichiers ?

#1504 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
On ne voit plus les "runs" relancés quand il y a eu déjà d'autres résulats sans scheduler

#1505 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
liste des patients : pb sur le droit 'anon' ?

#1512 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Les raccourcis clavier pavé numérique ne fonctionnent plus

#1513 · created Nov 29, 2016 by Vidjil Team old_tracker client client-keyboard priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
RNA-seq, representative, coverage

#1514 · created Nov 29, 2016 by Vidjil Team old_tracker bio-rnaseq cpp-representative priority-2
- 0
updated Nov 29, 2016
Color by locus

#1516 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Patient précédent/suivant (pour tous les utilisateurs)

#1518 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Avoir un moyen, depuis le serveur, de signaler un m.wait()

#1521 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-3-month server
- 1
updated Dec 11, 2020
database.js: centraliser tous les appels AJAX dans une fonction commune ?

#1522 · created Nov 29, 2016 by Vidjil Team old_tracker client client-database dev-policy dev-refactor priority-2 server
- 0
updated Dec 11, 2020
web2py reste bloqué et ne répond plus

#1524 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server
- CLOSED
- 0
updated Nov 29, 2016
Pertinence du “day after first sample” par défaut ?

#1525 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-ergonomy client-graph priority-2
- CLOSED
- 0
updated Nov 29, 2016
Coding practice: que met-on dans le contrôleur ?

#1527 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion dev-policy server
- 0
updated Nov 30, 2016
Positions dans les séquences commençant à 1

#1528 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard client cpp repseq-formats
- 0
updated Nov 30, 2016
L'accès à la config n'est pas vérifié : bug ou feature ?

#1530 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server-auth server-database
- CLOSED
- 0
updated Jan 31, 2017
Avec FF37, problèmes de chargement complet du browser

#1531 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-graph client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection par colonne/ligne : '?' sélectionne trop de choses

#1532 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection par colonne/ligne et clone 'other'

#1533 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-too-vague client-grid priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Sélection par colonne/ligne et clones invisibles

#1535 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion *-too-vague client-grid priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
impersonate

#1536 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week server server-auth
- CLOSED
- 0
updated Jan 31, 2017
Date de naissance et dates de samples facultatives

#1537 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server
- CLOSED
- 0
updated Nov 29, 2016
dates facultatives

#1538 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server sub
- CLOSED
- 0
updated Nov 29, 2016
si = None, pas d'âge

#1539 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server sub
- CLOSED
- 0
updated Nov 29, 2016
si = None, pas de "day after first sample"

#1540 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month server sub
- CLOSED
- 0
updated Nov 29, 2016
Résultat bizarre sur R1/R2

#1545 · created Nov 29, 2016 by Vidjil Team old_tracker !-important REN-Rennes feature priority-4-week server server-pre-process
- CLOSED
- 0
updated Dec 08, 2016
Problème de D7-J1 en complémentaire

#1548 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug REN-Rennes cpp-heuristic priority-4-week
- CLOSED
- 0
updated Mar 09, 2017
selected locus est initialisé avec le nombre de segmented reads

#1550 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-too-vague REN-Rennes client priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Impossible d'afficher la fenêtre d'information à l'intérieur d'un cluster

#1551 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-cloneList priority-2
- CLOSED
- 2
updated Apr 06, 2017
Une représentative, plusieurs clones

#1552 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug LIL-Lille cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Méta-données : maladie

#1555 · created Nov 29, 2016 by Vidjil Team old_tracker #-aap-ADT-Inria REN-Rennes bio-metadata priority-2 server-database
- 0
updated Feb 08, 2017
Méta-données : technique de séquençage

#1556 · created Nov 29, 2016 by Vidjil Team old_tracker #-aap-ADT-Inria bio-metadata priority-1-low server-database
- 0
updated Feb 07, 2017
V-D-D-J

#1557 · created Nov 29, 2016 by Vidjil Team old_tracker LIL-Lille PAN-Necker REN-Rennes bio-germlines cpp-dynprog cpp-finesegmenter priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Avoir une version fixe de web2py

#1560 · created Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-2 server
- CLOSED
- 1
updated Aug 22, 2019
.vidjil : pouvoir stocker plusieurs gènes D

#1561 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion priority-2 repseq-formats
- CLOSED
- 1
updated Dec 11, 2020
should-vdj: option revcomp

#1562 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control dev-tests priority-3-month
- CLOSED
- 0
updated Feb 14, 2019
Longueur des reads d'un clone, prendre tous les reads en compte

#1564 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go bio-control cpp-representative priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Warning pour une mauvaise e-valeur

#1566 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client priority-3-month
- CLOSED
- 0
updated Sep 16, 2019
Nettoyage des fausses dates

#1568 · created Nov 29, 2016 by Vidjil Team old_tracker data priority-1-low
- CLOSED
- 1
updated Nov 20, 2018
Prévenir (passivement) les utilisateurs quand on est en congés

#1569 · created Nov 29, 2016 by Vidjil Team old_tracker client-notifications priority-2
- CLOSED
- 0
updated Nov 09, 2017
Merger voodooj, option '-t'

#1570 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
algo: release 2015.05

#1571 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Faire marcher les tests model:load même sans localhost

#1572 · created Nov 29, 2016 by Vidjil Team old_tracker client dev-tests priority-2
- CLOSED
- 1
updated Dec 11, 2020
Coverage plus que douteux sur certains jeux de données

#1573 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-analyze-more bio-control cpp-heuristic priority-3-month
- 0
updated Apr 08, 2021
Envoyer des clones à BLAST

#1574 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control client client-export feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Enregistrer les analyses globalement, par patient, pas par config

#1575 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy feature priority-5-today server-database
- CLOSED
- 1
updated Feb 25, 2020
Documenter le format should-vdj

#1578 · created Nov 29, 2016 by Vidjil Team old_tracker LON-Jack collaboration priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
k-mers communs entre IGHV et IGHD

#1579 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic priority-3-month
- CLOSED
- 0
updated Mar 17, 2021
stanford-label-FaW.should_get et -t 100

#1582 · created Nov 29, 2016 by Vidjil Team old_tracker bio-trim priority-2
- 0
updated Mar 08, 2019
Makefile: ne pas regénérer vidjil et align.cgi quand pas besoin

#1583 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Makefile et make should

#1584 · created Nov 29, 2016 by Vidjil Team old_tracker dev-build dev-tests priority-2
- 0
updated Nov 29, 2016
Plot : avoir une légendre pour certains axes ?

#1585 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-grid priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Accéder à la fenêtre d'info de chaque clone depuis le segmenter

#1590 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
server/apache2_install.sh

#1591 · created Nov 29, 2016 by Vidjil Team old_tracker doc priority-1-low server
- CLOSED
- 0
updated Dec 11, 2020
segmenter.h/c: rationaliser les attributs d'information

#1592 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic dev-policy priority-2
- 0
updated Nov 29, 2016
Fournir des versions précompilées ?

#1594 · created Nov 29, 2016 by Vidjil Team old_tracker *-go dev-build priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Un test ne passe pas chez Ping

#1595 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug LON-Jack dev-tests priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Nombre de délétions incorrects dans le J et (surtout) incohérent avec celui du gène D

#1597 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug cpp-dynprog dev-tests-notable priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
e-valeur et arguments de getProbabilityAtLeastOrAbove() dans getMaximum

#1598 · created Nov 29, 2016 by Vidjil Team old_tracker bio-e-value cpp priority-2
- 0
updated Nov 29, 2016
prev et next ne sélectionnent pas la bonne config

#1599 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-5-today server wont-fix
- CLOSED
- 0
updated Nov 29, 2016
Versions longues des gènes

#1600 · created Nov 29, 2016 by Vidjil Team old_tracker LIL-Lille bio-analyze-more priority-3-month
- CLOSED
- 1
updated Nov 13, 2020
Changer les gènes V(D)J d'un clone

#1601 · created Nov 29, 2016 by Vidjil Team old_tracker *-go REN-Rennes client-ergonomy priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sauvegarder les changements de germline et gènes dans le fichier .analysis

#1602 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-2 repseq-formats server
- CLOSED
- 0
updated Nov 29, 2016
top n'affiche pas le nombre de clones attendu

#1603 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Supprimer delta_max (et delta_min ?)

#1606 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-analyze-more cpp cpp-heuristic priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
python, import et modules

#1608 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server-fuse
- 0
updated Nov 29, 2016
tools/align.cpp pour génération de matrice de distance

#1611 · created Nov 29, 2016 by Vidjil Team old_tracker cpp cpp-dynprog priority-3-month server-cgi
- CLOSED
- 1
updated Aug 28, 2017
Mettre en place la config vidjil-dev, qui lance release-candidate

#1612 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 1
updated Aug 27, 2020
Sélection IJD

#1613 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Utilité du TIMEOUT ?

#1615 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server
- CLOSED
- 1
updated Mar 28, 2018
Changer germline/genes et tests

#1617 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Bug 20150604, une séquence de S22 non segmentée sur certaines archis

#1619 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-e-value cpp priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Vidjil-all-slaves directement après coverage ?

#1620 · created Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-1-low
- CLOSED
- 1
updated Mar 05, 2019
freebsd, pb avec Makefile, gmake ?

#1621 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug dev-build priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
export anaylsis : fichier sans le nom du patient/fichier original

#1624 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug
- 0
updated Nov 30, 2016
Dans le browser, cluster by ne fonctionne plus

#1625 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
En offline le nom des points est celui des original filenames (dans le .data) pas celui des names (dans le .analysis)

#1626 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-offline priority-2
- CLOSED
- 0
updated Nov 29, 2016
Que doit renvoyer l'automate pour indexLoad ?

#1630 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-aho priority-3-month
- CLOSED
- 1
updated Sep 12, 2017
patient/stats ne retourne pas forcément le bon fichier fused

#1632 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug app-stats
- 0
updated Dec 04, 2020
Renommer le clone "other"

#1635 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-ergonomy priority-2
- CLOSED
- 0
updated Nov 29, 2016
fuse.py, similarity et chemins relatifs

#1636 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Replicats pour gommer des erreurs de PCR/séquençage

#1638 · created Nov 29, 2016 by Vidjil Team old_tracker Paris-Pitié bio-control feature priority-2
- 1
updated Jul 30, 2020
Export svg générique sur toute vue grid / bar

#1639 · created Nov 29, 2016 by Vidjil Team old_tracker client-export com-vw-vidjil-workshop feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016