Issues · vidjil / vidjil

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À l'ouverture d'un patient, sélectionner un bon système

#1327 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-germlines client priority-2
- CLOSED
- 0
updated Nov 29, 2016
En cas d'absence de fichier de config, la fenêtre de bienvenue ne s'affiche pas.

#1329 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week
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updated Nov 29, 2016
Tri aussi par ordre décroissant

#1330 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-database client-ergonomy priority-2
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- 0
updated Nov 29, 2016
Faire passer les tests watir

#1331 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client dev-ci dev-tests dev-tests-watir priority-5-today
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- 0
updated Nov 18, 2017
Anonymisation : il reste quelques endroits en clair

#1332 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low
- CLOSED
- 1
updated May 26, 2020
nom du patient transféré dans le .analysis (et affiché dans le info)

#1333 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 0
updated Feb 01, 2017
page des fichiers fasta d'un patient

#1334 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 0
updated Feb 01, 2017
export pdf

#1335 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 1
updated Feb 01, 2017
(et le backdoor du search, mais ok)

#1336 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 1
updated Feb 01, 2017
nom du fichier .csv

#1337 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 0
updated Feb 01, 2017
noms des fichiers .data et .analysis exportés

#1338 · created Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
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- 0
updated Feb 01, 2017
Après un cache-cache, les clones peuvent devenir obèses

#1340 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-grid priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Afficher le nom (anonymisé) du patient dans les dialogues "delete patient" et "permission"

#1341 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-2
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- 0
updated Nov 29, 2016
Anonymisation : quand un patient est créé, l'uploader doit avoir le droit "anon"

#1342 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug #-privacy *-go priority-4-week
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updated Nov 29, 2016
L'onglet "users" ne fonctionne plus sur rbx

#1347 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week
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- 0
updated Nov 29, 2016
Point non montré

#1349 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-4-week server server-fuse
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- 0
updated Nov 29, 2016
API: le analysis=xxxx ne fonctionne pas

#1350 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today repseq-Nikos server-api
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- 0
updated Nov 29, 2016
export html: diagnostic

#1352 · created Nov 29, 2016 by Vidjil Team old_tracker *-go LIL-Lille PAN-Necker client-export priority-5-today
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- 0
updated Nov 29, 2016
algo: minor release 2014.12

#1353 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
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updated Nov 29, 2016
Upload de plus de 2G impossible

#1354 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server server-upload
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- 0
updated Feb 04, 2021
Axes lors de la normalisation

#1355 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-normalization priority-4-week
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- 0
updated Apr 03, 2017
export html: Transformer l'export pdf en export html

#1356 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-5-today
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updated Nov 29, 2016
export ouvre un nouvel onglet, page html avec le rapport

#1357 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-5-today sub
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updated Nov 29, 2016
cette page html est auto-contenue (css)

#1358 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-5-today sub
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- 0
updated Nov 29, 2016
export html: transformation en .pdf par le serveur

#1359 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client-export priority-1-low server
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updated Nov 29, 2016
Dd-Ja

#1363 · created Nov 29, 2016 by Vidjil Team old_tracker bio-germlines dev-tests-notable priority-3-month
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- 0
updated Nov 29, 2016
Heuristique multi-systèmes 1.9, marquer les k-mers ambigus entre plusieurs systèmes

#1365 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
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updated Nov 29, 2016
export du C++ vers le fichier .vidjil (comme pour "seg" ?)

#1370 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important bio-AA cpp feature priority-3-month repseq-formats sub
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updated Nov 29, 2016
détecter Cys, Phe/Trp, "vers le bon endroit" (pas trop loin de la window)

#1371 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important bio-AA cpp feature priority-3-month repseq-formats sub
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updated Nov 29, 2016
traduire en AA

#1372 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-important bio-AA cpp feature priority-3-month repseq-formats sub
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updated Nov 23, 2017
scatterplot : longueur du CDR3 (nucl et AA) comme axe d'analyse

#1373 · created Nov 29, 2016 by Vidjil Team old_tracker !-important *-go LIL-Lille PAN-Necker bio-AA client-grid feature priority-4-week
- CLOSED
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updated Nov 29, 2016
Raccourci clavier : shift-P pour revenir à la liste des patients

#1377 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy client-keyboard priority-3-month
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updated Nov 29, 2016
export html: Faire que les séquences soient en format Fasta

#1379 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-3-month
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updated Nov 29, 2016
export html: si rien de sélectionné, mettre les 2/3 clones majoritaires *par système* sous chaque scatterplot

#1380 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-5-today
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- 0
updated Nov 29, 2016
export html: remplir le div="header-title"

#1381 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-4-week
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updated Nov 29, 2016
export html: version de Vidjil (et command line / run date)

#1383 · created Nov 29, 2016 by Vidjil Team old_tracker client client-export cpp priority-4-week server-fuse
- CLOSED
- 0
updated Nov 29, 2016
export html multi-systèmes: voir aussi le % par rapport à chaque système

#1384 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-3-month
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updated Nov 29, 2016
Par défaut, liste des patients triée par plus récent en haut

#1387 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy priority-3-month
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updated Nov 29, 2016
Compare patients : debug

#1388 · created Nov 29, 2016 by Vidjil Team old_tracker REN-Rennes dev-robust priority-4-week server-compare-samples
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updated Nov 29, 2016
Compare patients : dans certains cas, il ne se passe rien

#1389 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server-compare-samples
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updated Nov 29, 2016
IKmerStore:remove()

#1391 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
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updated Nov 29, 2016
Compare patients : et si on comparait des configs différentes ?

#1393 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client priority-3-month server-compare-samples
- CLOSED
- 0
updated Nov 29, 2016
Filter/search dans le 'compare patients'

#1394 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy priority-3-month server-compare-samples
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updated Nov 29, 2016
Heuristique 1.9b : tester toutes les germlines, renvoyer la meilleure

#1397 · created Nov 29, 2016 by Vidjil Team old_tracker cpp-heuristic priority-4-week
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updated Nov 29, 2016
Makefile et flags

#1398 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-build priority-3-month
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updated Nov 29, 2016
Calcul de la strand : améliorer, supprimer ?

#1399 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug !-reflexion bio-germlines cpp-heuristic priority-2
- 0
updated Nov 29, 2016
algo/tools: réparer cut.cpp

#1401 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-dead-code priority-1-low
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- 1
updated Aug 28, 2017
algo/tools: align.cpp

#1402 · created Nov 29, 2016 by Vidjil Team old_tracker priority-3-month
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updated Nov 29, 2016
Droits config

#1404 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 server-config
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updated Nov 29, 2016
C++11 : Jenkins et ses slaves, Travis

#1405 · created Nov 29, 2016 by Vidjil Team old_tracker *-go cpp dev-ci priority-3-month
- CLOSED
- 1
updated Sep 08, 2017
Deux fuse servers sur une même machine

#1406 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go dev-tests priority-3-month server server-fuse
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- 0
updated Nov 29, 2016
Colonne "Last login" dans le tableau "Users"

#1407 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-2 server-auth server-database
- CLOSED
- 0
updated Jan 31, 2017
browser, quand on appuie sur "info"

#1411 · created Nov 29, 2016 by Vidjil Team old_tracker client cpp-dynprog cpp-finesegmenter priority-2 sub
- CLOSED
- 1
updated Nov 20, 2018
export csv: mettre les pourcentages par système

#1414 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
sur Chrome, la database patient ne s'ouvre pas

#1416 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server-database
- CLOSED
- 0
updated Nov 29, 2016
Segmenter : pouvoir faire "undo" sur l'align

#1417 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-aligner priority-3-month
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- 0
updated Nov 29, 2016
Sous-sélection des clones et segmenter

#1418 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-reflexion client-aligner priority-2
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- 0
updated Nov 29, 2016
Icône "x" pour déselectionner un clone dans le segmenter

#1419 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-3-month
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updated Nov 29, 2016
algo: Release 2015-03

#1420 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
scatterplot : longueur de la séquence comme axe d'analyse

#1421 · created Nov 29, 2016 by Vidjil Team old_tracker client-bar priority-4-week
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- 0
updated Mar 11, 2017
axis: mécanisme générique

#1422 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard *-go client-grid dev-policy priority-3-month
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- 0
updated Nov 29, 2016
axis: reverse flexible, sur X mais pas sur Y

#1423 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-grid priority-4-week
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updated Nov 29, 2016
Remplacer sqlite par autre chose ?

#1425 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion dev-robust priority-4-week server-database
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updated Nov 29, 2016
Transition sqlite > MySQL ?

#1426 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week
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updated Nov 29, 2016
tester chez Marc, sur le serveur de dev, avant la migration de la prod

#1427 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
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updated Nov 29, 2016
remettre en place un mécanisme de sauvegarde

#1428 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
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updated Nov 29, 2016
ce serait l'occasion de tester la restauration de la DB à partir de sauvegarde

#1429 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-4-week sub
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updated Nov 29, 2016
Supervision externe des workers/tasks

#1430 · created Nov 29, 2016 by Vidjil Team old_tracker dev-robust priority-5-today server-monitor
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updated Nov 29, 2016
fuse.py n'arrive plus a fusionner des fichier clntab et vidjil

#1433 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-1-low server-fuse
- CLOSED
- 1
updated May 18, 2017
Focus

#1434 · created Nov 29, 2016 by Vidjil Team old_tracker !-important client feature priority-3-month
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updated Nov 29, 2016
Nomenclature : locus, chain ?

#1435 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion doc priority-5-today repseq-standardization
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- 0
updated Nov 29, 2016
Tests fonctionnels pour fuse.py

#1439 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-4-week server-fuse
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updated Nov 29, 2016
Être prévenu dès qu'un processus est FAILED

#1440 · created Nov 29, 2016 by Vidjil Team old_tracker priority-4-week server
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updated Nov 29, 2016
fuse.py: si le fichier .vidjil est malformé, erreur propre

#1441 · created Nov 29, 2016 by Vidjil Team old_tracker dev-robust priority-1-low server-fuse
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updated Nov 29, 2016
Se passer de org-babel-tangle ?

#1444 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-1-low wont-fix
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updated Nov 29, 2016
Scatterplot en clone/CDR3 length n'est pas réparti par système

#1445 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-too-vague client-grid priority-2
- CLOSED
- 1
updated Nov 04, 2021
Afficher les .affects dans le browser

#1449 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-aligner cpp feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Option '-X', s'arrêter après un certain nombre de clones

#1450 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control cpp cpp-options feature priority-5-today
- CLOSED
- 0
updated Jan 26, 2017
rajouter un argument "stop_after" à WindowExtractor::extract

#1451 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control cpp feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
Config 'debug kmers' sur le serveur

#1452 · created Nov 29, 2016 by Vidjil Team old_tracker !-important feature priority-3-month
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updated Nov 29, 2016
Faire un test .should_get pour '-X'

#1454 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-tests priority-3-month
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updated Nov 29, 2016
Scatterplot : transition histo > grid

#1455 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-grid priority-2
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updated Nov 29, 2016
Scatterplot : axe y en mode histo

#1456 · created Nov 29, 2016 by Vidjil Team old_tracker client-grid priority-3-month
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updated Nov 29, 2016
Scatterplot : histo, respecter les systèmes sélectionnés

#1457 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-germlines client-grid priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Rajouter des tests watir

#1459 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client dev-ci dev-tests dev-tests-watir priority-3-month
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updated Nov 18, 2017
Les rapports ne fonctionnent plus, ils ont des bouts de bar plot dedans

#1460 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-export client-grid priority-5-today
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updated Nov 29, 2016
javascript, modularisation + main.js

#1462 · created Nov 29, 2016 by Vidjil Team old_tracker client dev-robust priority-4-week repseq-Nikos
- CLOSED
- 0
updated Nov 29, 2016
IMGT : regarder ce qu'on va prendre dans les .csv

#1463 · created Nov 29, 2016 by Vidjil Team old_tracker !-important *-go priority-5-today repseq-IMGT
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- 0
updated Nov 29, 2016
/reports

#1466 · created Nov 29, 2016 by Vidjil Team old_tracker dev-code-quality priority-1-low
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- 2
updated Aug 27, 2020
Le fichier de conf du browser est devenu obligatoire. Vraiment ?

#1467 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client priority-4-week server-config
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- 0
updated Nov 29, 2016
Représentative : mesure de qualité

#1468 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control cpp-representative priority-4-week
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- 0
updated Nov 29, 2016
Axes : tag, locus ?

#1472 · created Nov 29, 2016 by Vidjil Team old_tracker client-axis feature priority-2
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- 0
updated Nov 29, 2016
align colore parfois les mauvaises bases comme étant des mutations

#1474 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-aligner priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sablier / indicateur quand on attend le résultat d'une requête de la DB

#1476 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-ergonomy dev-robust priority-2 server-database
- CLOSED
- 1
updated Dec 16, 2016
Voir les séquences germlines

#1477 · created Nov 29, 2016 by Vidjil Team old_tracker *-go bio-control bio-germlines client-export feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Afficher le "% coverage" comme axe d'analyse

#1478 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Dans le c++, sortir cette info en nombre

#1479 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
Vérifier qu'elle passe au fuse

#1480 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
L'afficher dans le browser

#1481 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control client-axis cpp cpp-representative priority-3-month server-fuse sub
- CLOSED
- 0
updated Nov 29, 2016
Export fasta : une idée de la segmentation avec des retours à la ligne

#1484 · created Nov 29, 2016 by Vidjil Team old_tracker client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016