Flexible strategy for MRD (and other things)
Discussed with @meidanis @mikael-s @flothoni
- In
/spikes/spikes-A.json
:
'config': {
'labels': [
{ 'name': 'foobar', 'sequence': 'ACGTG...', 'copies': xxx, 'family'... }
-
the server-config says:
- launch
vidjil-algo --label-json /spikes/spikes-A.json ....
- launch
fuse.py --pre normalize.py
- launch
-
vidil-algo
will understand onlyname
andsequence
, but will copy everything fromspikes-A.json
, includingcopies
or other fields, to its.vidjil
output #3837 (closed) #3839 (closed) -
normalize.py
addsnormalized_reads
where he wants (@meidanis)
Edited by Joao Meidanis