vidjil issueshttps://gitlab.inria.fr/vidjil/vidjil/-/issues2024-01-22T14:12:36+01:00https://gitlab.inria.fr/vidjil/vidjil/-/issues/5210Test external, add a server side for CGI/proxy that are not fully tested2024-01-22T14:12:36+01:00THONIER FlorianTest external, add a server side for CGI/proxy that are not fully testedFor the moment, our external tests are launch on client, and use CGI from db.vidjil.org.
This cause an error as we don't really test server cgi service. And indeed, py4web cgi don't work.
We need to add some tests on CGI on the serve...For the moment, our external tests are launch on client, and use CGI from db.vidjil.org.
This cause an error as we don't really test server cgi service. And indeed, py4web cgi don't work.
We need to add some tests on CGI on the server side (and on feature-s branches).Web 2024.04https://gitlab.inria.fr/vidjil/vidjil/-/issues/5167Can create generic set with some rules to select samples to import2023-10-11T18:14:43+02:00THONIER FlorianCan create generic set with some rules to select samples to importI want for a meta-analysis create a set with some samples that have in my case a similar tags.
That make me think about a dynamic playlist for music, with a list of rules to compose it.
It could be usefull to be able de to create a set...I want for a meta-analysis create a set with some samples that have in my case a similar tags.
That make me think about a dynamic playlist for music, with a list of rules to compose it.
It could be usefull to be able de to create a set by giving some rules, for example tags, number of reads, age of patient, disease, ...).
In this case, sample of a set should probably be constant with a refresh button if needed to update list.
This would improve usage of server for research purpose I presume.
This usage could also be benifit for appstats.
A button to generate a fuse without needing of relaunch an analysis should also be present I think.https://gitlab.inria.fr/vidjil/vidjil/-/issues/5159Ł caracter create a failure on server2023-08-16T11:35:39+02:00THONIER FlorianŁ caracter create a failure on serverThis character (Ł)[https://fr.wikipedia.org/wiki/%C5%81] create a fail at the preprocess step.
It is include by (unicode)[https://www.unicodepedia.com/unicode/latin-extended-a/142/latin-small-letter-l-with-stroke/].
In that case, no resu...This character (Ł)[https://fr.wikipedia.org/wiki/%C5%81] create a fail at the preprocess step.
It is include by (unicode)[https://www.unicodepedia.com/unicode/latin-extended-a/142/latin-small-letter-l-with-stroke/].
In that case, no result are returned, no file created, no log neither.
If I manually launch preprocess, it seem to complete normally. But the file name replace this character by octal utf encoding ('\305\202')
```bash
python flash2.py /usr/share/pear/ /mnt/upload/uploads/sequence_file.data_file.xxx.gz /mnt/upload/uploads/sequence_file.data_file.YYY.gz /mnt/result/tmp/pre/out-119703//AAA_łxxx.fastq.gz -r2 -f "-M 300"
--> created file: AAA_'$'\305\202''xxx.fastq.gz
```
I presume that error are with the server.
This issue concern web2py version of server. Don't know for futur py4web version.