vidjil issueshttps://gitlab.inria.fr/vidjil/vidjil/-/issues2019-10-23T07:06:33+02:00https://gitlab.inria.fr/vidjil/vidjil/-/issues/4011Better document "slow" options that should be avoided2019-10-23T07:06:33+02:00Mathieu GiraudBetter document "slow" options that should be avoided(Zhang, 2019) used `-a` (the option is now `--out-reads`), that is far from optimal, taking time to output all reads vdj#919
Since !434, options were renamed and are more explicit.
However, we should ensure that the non-recommended opti...(Zhang, 2019) used `-a` (the option is now `--out-reads`), that is far from optimal, taking time to output all reads vdj#919
Since !434, options were renamed and are more explicit.
However, we should ensure that the non-recommended options are clearly docuemted as such:
- in `-h` / `-H` (we could also move options from `-h` to advanced usage `-H`)
- with `Warning for non-optimal use` on stdout (we have already some)
- in `doc/vidjil-algo.md`