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This should fix #2153.

This makes the code more regular, and fixes #1006.

These tests were previously launched without '-i', on purpose.

See #2153.

New features with -g.
-g is the recommended way, -V/-D/-J/-G are more advanced.

This failing test is linked to #2003.

Now we mark as 'ignored' the failing tests (see #2158),
but set a milestone for issues that 'should be resolved before next release' (here %1).

It's curious that this test was not failing before: The fasta file was wrong.
Anyway, the test does not work.
Opens #2157.

This implies a change in the -m value.
See #1673.

They are not happy with -g, as they use specific parameters.
See #2156.

The recommended option is now '-g germline/homo-sapiens.g'.

Defers to core/germline.cpp the possible failure in opening the file.
Completes the previous commit to fix #2134.

We now recognize only exact matches. See #2134.

See #1233

Germlines are now on the www for consistency.

When using custome germlines the
this.m.germlineList.list[system]['recombinations'] was not defined and generated an error that prevented the loading of the germlines.

Fix vidjil/vdj#334

Completes #1987 and #2132.

Fixes #2132.

See #2132.

HTML entities end with a ;

Feature/species

Closes #1987

See merge request !4

The .g files will be now referred as "germline/homo-sapiens.g", instead of
the longer and redundant "germline/homo-sapiens.germline".
This will improve readability at several places, and is
far more meaningful than the previous "germline/germlines.data".

Fixes #1987.