Commits · feature-tc/3902_genescan_gris_et_distributions · vidjil / vidjil

29 Aug, 2019 3 commits
- tt · 4a289a70
  flothoni authored Aug 29, 2019
  
  4a289a70
- tt · ea250407
  flothoni authored Aug 29, 2019
  
  ea250407
- Aout en vrac des nombreuses modifications pour utiliser les distribtuion dans le client · 0826b274
  flothoni authored Aug 29, 2019
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Sera rebasé à terme. 
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  0826b274
27 Jun, 2019 3 commits
- fuse.py; add new filed to the list of axe to compute · 01611d59
  Thonier Florian authored Jun 27, 2019
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link to #3944 and #3902
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  01611d59
- fuse.py; add some field for distribution computing · 6103a4ef
  Thonier Florian authored Jun 27, 2019
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link to #3944 and #3902
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  6103a4ef
- fuse.py; add computing of gc content distribution · 2a351ae7
  Thonier Florian authored Jun 27, 2019
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link to #3944 and 3902
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  2a351ae7
20 Jun, 2019 1 commit
- fuse, update doctest · ba6c57d0
  Thonier Florian authored Jun 20, 2019
  
  ba6c57d0
19 Jun, 2019 5 commits
- tools/test; add test on computing distribution at fuse call · c24bba9c
  Thonier Florian authored Jun 19, 2019
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link to #3902
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  c24bba9c
- fuse.py; add a fixme comment; return aggregation of categories at distributions export · 35e043cb
  Thonier Florian authored Jun 19, 2019
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link to #3902
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  35e043cb
- tools/test; update test for fuse distribution computing* · ee2c24c3
  Thonier Florian authored Jun 19, 2019
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link to #3902
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  ee2c24c3
- data; add a vidjil file for testing, with categories and 5 real clones · c98561ec
  Thonier Florian authored Jun 19, 2019
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link to #3902
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  c98561ec
- data; rename name of original file for testing purpose · 53325b4f
  Thonier Florian authored Jun 19, 2019
  
  53325b4f
14 Jun, 2019 9 commits
- fuse.py;: add call to categories/metadata aggregation · c21f9418
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  c21f9418
- fuse.py; delete call to a log function · 7af0b7b3
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  7af0b7b3
- fuse.py; add a try on add data for distributions · 8bdd505d
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  8bdd505d
- fues.py; add Categories class to manipulate some metadata of vidjil files · d54efada
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  d54efada
- fuse.py: Use the 2 new computable value of clones · e2b9b7a1
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  e2b9b7a1
- fuse.py; add fct to compute the rearangment status of a clone. · f96f71e7
  Thonier Florian authored Jun 14, 2019
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Link to #3902
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  f96f71e7
- fuse.py; add 'complete' to availabel clone value · bea9ac9c
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  bea9ac9c
- fuse.py; add 4a and 4b to clones values · fcd6dab2
  Thonier Florian authored Jun 14, 2019
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link to #3902
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  fcd6dab2
- fuse.py; update testing doctest · 62c11382
  Thonier Florian authored Jun 14, 2019
  
  62c11382
13 Jun, 2019 13 commits
- fuse.py; move a try loop to detect if clones have seg · 81b0d9a8
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  81b0d9a8
- fuse.py; add clone for doctest · 1e4a2c24
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  1e4a2c24
- fuse.py; add statement to add distributions between to jlist object · 077fb8d3
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  077fb8d3
- fuse.py; move up some statement into the main fct. · 5e9d6a9d
  Thonier Florian authored Jun 13, 2019
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Allow to compute distributions before the cut step
link to #3902
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  5e9d6a9d
- fuse.py; add a try test on clone.get_values function. · e082c0b9
  Thonier Florian authored Jun 13, 2019
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Allow to specify if the clone is not segmented, that is different that a clone without the field.
link to #3902
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  e082c0b9
- fuse.py; add 2 args to decide to compute distributions and/or export it · a2076bd3
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  a2076bd3
- fuse.py; minor bug fix · d486478a
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  d486478a
- fuse.py; add function to export distributions as a json file. · a887f590
  Thonier Florian authored Jun 13, 2019
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This function can be seperated for json_save function
link to #3902
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  a887f590
- fuse.py; add functions to compute distributions values · 9fde1155
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  9fde1155
- fuse.py; add a function to construct distributions structure · 18c2e936
  Thonier Florian authored Jun 13, 2019
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Prefill the distributions, but doesn't compute values
link to #3902
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  18c2e936
- fuse.py; add a fct to get the position by filename · 69963d1e
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  69963d1e
- fuse.py; remove previous function to compute distributions · 3b7bc561
  Thonier Florian authored Jun 13, 2019
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link to #3902
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  3b7bc561
- fuse.py; add function to clones to get specifi values · 6741af65
  Thonier Florian authored Jun 13, 2019
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Allow to easily get value by axe for distributions
link to #3902
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  6741af65
12 Jun, 2019 1 commit
- tools/distribution.py; add a script to compute distributions on vidjil files · aff60475
  Thonier Florian authored Jun 12, 2019
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Probably use by fuse.py
In pseudo-code, just an orientation
Link to #3902
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  aff60475
06 Jun, 2019 4 commits
- fuse.py; concat distribution at addition · fddb5aa7
  Thonier Florian authored Jun 06, 2019
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link to #3902
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  fddb5aa7
- fuse.py; compute distribution directly at the json load · cf3749d3
  Thonier Florian authored Jun 06, 2019
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link to #3902
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  cf3749d3
- fuse.py; remove previous distribution computing · 722bafee
  Thonier Florian authored Jun 06, 2019
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link to #3902
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  722bafee
- fuse.py; add a function to compute distributions for smaller clones · 61e9b25e
  Thonier Florian authored Jun 06, 2019
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link to #3902
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  61e9b25e
03 Jun, 2019 1 commit
- Merge branch 'feature-c/3913-vquest-api-change' into 'dev' · ce69f30b
  Mikaël Salson authored Jun 03, 2019
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V-QUEST API change

Closes #3913

See merge request !472
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  ce69f30b