Link to #3630

Give now browser path, allow to make matrix testing
Link to #3630

Allow to be more flexible on ci pipeline
Link to #3630

CSS, fix error of percentage for calc rule

See merge request !1044

.gitlab-ci-compilers.yml: Use `rules` to merge manual and automatic jobs

Closes #4859 and #3630

See merge request !1039

repeat CI jobs for reproducibility

See merge request !1038

Fix #4859

Cypress; ajout de fonction pour les aspects serveur

See merge request !999

The jobs are taken from .gitlab-ci.ymls provided to a script.
The script is in charge of repeating the jobs the number of times required.

See #4592

Report non-designated sequences as 'Possibly'

Closes #4818

See merge request !1008

Show again logs

Closes #3607

See merge request !1033

We will decide later what to do here.
See #4880

--align, launch SEG_METHOD_ONE from command line

Closes #4689

See merge request !1004

It would be here misleading to output 'Possibly ...'.
Follows #4818.

doc/warnings.md, vidjil.cpp, core/segment.cpp: checkWarnings(), W68 for non-designated clones with 'not designated' germline

Note that W68 is added from vidjil.cpp: We do not want this warning with -c designations.

closes #4818

vidjil.cpp, core/segment.cpp: set a 'Possibly' code for non-designated reads and export this information

see #4818

opens #4818

Use --find instead of --align
See !1004

Mathieu Giraud authored Sep 15, 2021 and Mikaël Salson committed Oct 15, 2021

close #4689

Mathieu Giraud authored Sep 21, 2021 and Mikaël Salson committed Oct 15, 2021

see #4689, but also #2968