GitLab

rework in mr 933

Merge branch 'feature-c/genescan_primer_search' of gitlab.inria.fr:vidjil/vidjil into feature-c/genescan_primer_search

Test simple case with or without mismatchs

Add test of basic alignement
add test with degenerated sequences

Also add informations about library in info.txt

Update test with it

Update test

Also update tests on it

This function is now include inside another function: addSegFeatureFromSeq
Update tests

Now, option is given between biomed2, ecgns 2019, and ecngs FR1

Use now a better search function that work with alignment.
This allow to find primer even without perfect match on sequence

Now will look for match in germline sequence if no perfect match found in clone sequence

primer 3 sequence is given in reverse complement

take an array of sequences

qunit; update some tests with germline sequence

Closes #4749

See merge request !936

Now germline have longer up/down sequence.

60 bp up/down-stream

Closes #4656

See merge request !892

update classifications and configurations

See merge request !931

tests: fuse after -y/-z

See merge request !934

Now tests will be run in writing order

We are still amazed by this, but this works.
see #3970

Update germlines to 2021-01-21

Closes #4660, #4725, and #4271

See merge request !885

New sequence aligner

See merge request !836

disable test for germline