Commits · feature-c/4627-display-notification-in-custom-console · vidjil / vidjil

View open merge request

24 Feb, 2021 18 commits
- notification.py : do not mark as read news when page open due to redirection · 1286f986
  marc duez authored Feb 24, 2021
  
  1286f986
- js/{com,notification}.js: bikeshedding, less text · 226ccdb3
  Mathieu Giraud authored Feb 05, 2021
```
inspired by @mikael-s
```
  226ccdb3
- conf.js.sample : add example for detailed alert · f2d3fdc7
  marc duez authored Jan 21, 2021
  
  f2d3fdc7
- css : nitpicking · 208f1712
  marc duez authored Jan 21, 2021
  
  208f1712
- css/less : update flash notification and popup css · 6984fa5d
  marc duez authored Jan 15, 2021
  
  6984fa5d
- index.html : use correct icon for closebutton · 3db247bd
  marc duez authored Jan 15, 2021
  
  3db247bd
- main.js : handle config.alert using flash notification · 1342cef8
  marc duez authored Jan 15, 2021
  
  1342cef8
- shortcut.js : add ctrl+l shortcut for log window · e88aea69
  marc duez authored Jan 15, 2021
  
  e88aea69
- com.js : toggle log window function · 24769ef3
  marc duez authored Jan 15, 2021
  
  24769ef3
- com.js : all flash notification are also printed in log window · 7121c151
  marc duez authored Jan 15, 2021
  
  7121c151
- com.js : customLog can handle database call link · 5b104593
  marc duez authored Jan 15, 2021
  
  5b104593
- com.js : hover mode for log window · c5561a08
  marc duez authored Jan 15, 2021
  
  c5561a08
- index.html : remove old header notification div · 32bea1b8
  marc duez authored Jan 13, 2021
  
  32bea1b8
- notification.js : ignore already displayed notifications · a0318d1f
  marc duez authored Jan 13, 2021
  
  a0318d1f
- notification.js : handle header notifications with a console flash message · c082527c
  marc duez authored Jan 13, 2021
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flash messages allow more content and can be stacked at infinitum 
```
  c082527c
- com.js : allow html in message · b24b5371
  marc duez authored Jan 13, 2021
  
  b24b5371
- com.js : flash popup can display a link to a db page · 6cb2cda4
  marc duez authored Jan 13, 2021
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needed to display server notification with link
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  6cb2cda4
- com.js : use binding method instead of wrapper · aede60f0
  marc duez authored Jan 13, 2021
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keep original trace of unmodified console function
```
  aede60f0
23 Feb, 2021 1 commit
- Merge branch 'feature-c/4632-analyse-avec-mixcr-et-distributions' into 'dev' · 0fa4d88b
  Mathieu Giraud authored Feb 23, 2021
```
Resolve "Analyse avec MiXCR ne fonctionne pas avec les distributions"

Closes #4632

See merge request !882
```
  0fa4d88b
19 Feb, 2021 2 commits
- Merge branch 'doc/workflow-filtering-2' into 'dev' · 03757218
  Mathieu Giraud authored Feb 19, 2021
```
doc/workflow.md: details

See merge request !920
```
  03757218
- doc/workflow.md: -M 300 · 3899abfd
  Vidjil Team authored Feb 19, 2021
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discussed together
```
  3899abfd
18 Feb, 2021 5 commits
- doc/workflow.md: details · 06d5ef10
  Mathieu Giraud authored Feb 17, 2021
  
  06d5ef10
- Merge branch 'feature-a/release' into 'dev' · ad8c3635
  Mathieu Giraud authored Feb 18, 2021
```
Algo 2021.02.2

See merge request !917
```
  ad8c3635
- functional issues data; minor fix on loaded data · d9e68a92
  flothoni authored Feb 18, 2021
  
  d9e68a92
- vidjil: release 2021.02.2 · 0ad00681
  Mathieu Giraud authored Feb 17, 2021
```
see !917
```
  0ad00681
- vidjil.cpp: cancel --gz effect on .windows.fa · 986899bb
  Mathieu Giraud authored Feb 18, 2021
```
We must first understand something discovered by valgrind.
Partially revert 2a55bc2e.
```
  986899bb
17 Feb, 2021 14 commits
- doc/credits.md: publications, homogenize · bcda2041
  Mathieu Giraud authored Feb 17, 2021
  
  bcda2041
- doc/credits.md: new publications using Vidjil · 1af82d8e
  Mathieu Giraud authored Feb 17, 2021
  
  1af82d8e
- Merge branch 'feature-a/pretty-message' into 'dev' · cea776f5
  Mathieu Giraud authored Feb 17, 2021
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--gz : pretty message, outputs .affects.gz and windows.fa.gz

See merge request !919
```
  cea776f5
- Merge branch 'doc/locus-update' into 'dev' · f739dc6d
  Mathieu Giraud authored Feb 17, 2021
```
doc/locus.md: Update, length biais on RNA-Seq

See merge request !873
```
  f739dc6d
- Apply 1 suggestion(s) to 1 file(s) · 44a60ee5
  Mathieu Giraud authored Feb 17, 2021
  
  44a60ee5
- vidjil.cpp: --gz also output .affects.gz files · 41fa5982
  Mathieu Giraud authored Feb 17, 2021
  
  41fa5982
- vidjil.cpp: --gz also outputs .windows.fa.gz files · 2a55bc2e
  Mathieu Giraud authored Feb 17, 2021
  
  2a55bc2e
- vidjil.cpp: pretty-print last file message · 5512e8be
  Mathieu Giraud authored Feb 17, 2021
```
follows 4f37bccb
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  5512e8be
- Merge branch 'feature-a/4692-4696-detected.fa.gz' into 'dev' · 601d2564
  Mikaël Salson authored Feb 17, 2021
```
--gz outputs .fa.gz files, --filter-reads outputs .fa{,.gz} files

Closes #4692

See merge request !916
```
  601d2564
- algo: GZ_SUFFIX factorization · 4f37bccb
  Mikaël Salson authored Feb 17, 2021
  
  4f37bccb
- tests: new tests · e687b492
  Mathieu Giraud authored Feb 12, 2021
```
close #4692
```
  e687b492
- vidjil.cpp: --gz also output *detected.fa.gz files · 0ed84321
  Mathieu Giraud authored Feb 12, 2021
```
see #4692
```
  0ed84321
- core/windowExtractor.{h,cpp}: **out_unsegmented_detail may be a ostream · a95c2ed5
  Mathieu Giraud authored Feb 12, 2021
```
see #4692
```
  a95c2ed5
- Merge branch 'feature-a/4681-filter-reads' into 'dev' · 22ad13cf
  Mathieu Giraud authored Feb 17, 2021
```
Preset --filter-reads

Closes #4681

See merge request !906
```
  22ad13cf