1. 27 Feb, 2016 2 commits
  2. 22 Feb, 2016 1 commit
  3. 17 Feb, 2016 3 commits
  4. 06 Feb, 2016 5 commits
  5. 05 Feb, 2016 8 commits
  6. 04 Feb, 2016 1 commit
  7. 02 Feb, 2016 8 commits
  8. 01 Feb, 2016 6 commits
  9. 28 Jan, 2016 1 commit
  10. 26 Jan, 2016 3 commits
  11. 21 Jan, 2016 1 commit
    • Mathieu Giraud's avatar
      core/affectanalyser.cpp: safer p-value estimation, taking into account the central region · 2e23e720
      Mathieu Giraud authored
      As detected by @mikael-s in the parent commit, the region between V and J affectations
      was not taken into account in the p-values, yielding erroneous segmentations
      when this region was very large.
      
      Now this region is counted *both* for the computation of left and right p-values, solving
      the bug of the parent commit.
      
      This could be sometimes over-conservative : are we counting things twice ?
      In regular situations, the answer is no, as the p-values
      are eventually computed by getProbabilityAtLeastOrAbove in kmerstore.h,
      that takes into account the length of the seed.
      
      A more exact option could have been to use something like
      (first_pos_max + last_pos_max / 2) + getS()/2, but it would raise symmetry problems.
      The selected option should anyway improve the estimation in most of the cases.
      2e23e720
  12. 22 Dec, 2015 1 commit