Commits · fada90bd195dd16a96f30e013aea3783330601bd · vidjil / vidjil

17 Feb, 2015 19 commits
- fuse.py: streamline vidjil_json_version, producer and timestamp, and samples/ · fada90bd
  Mathieu Giraud authored Feb 18, 2015
```
The top-level fields are created once when initializing ListWindows(),
whereas sample/ fields are created when loading data into ListWindows()
```
  fada90bd
- fuse.py: .clntab, keep raw clonotype name · 53b23213
  Mathieu Giraud authored Feb 17, 2015
  
  53b23213
- fuse.py: update unit tests · 5dca7330
  Mathieu Giraud authored Feb 17, 2015
  
  5dca7330
- segmenter.js : display highlight menu · ca6859e6
  Marc Duez authored Feb 17, 2015
  
  ca6859e6
- scatterplot.js : use custom generic function instead of specific · 7645d370
  Marc Duez authored Feb 17, 2015
  
  7645d370
- scatterplot.js/axis.js : add custom function to create more axis · 6f2e7466
  Marc Duez authored Feb 17, 2015
  
  6f2e7466
- segmenter.js : display only available checkbox for highlight · 247e4dde
  Marc Duez authored Feb 17, 2015
  
  247e4dde
- Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil into cdr3 · c6c63a98
  Marc Duez authored Feb 17, 2015
  
  c6c63a98
- debug · 9c865ae5
  Marc Duez authored Feb 17, 2015
  
  9c865ae5
- segmenter.js : use cdr3 field instead of "junction nt ..." · 9b1c8c1a
  Marc Duez authored Feb 17, 2015
  
  9b1c8c1a
- segmenter.js : replace highlight menu with checkbox · 4d7788b1
  Marc Duez authored Feb 17, 2015
  
  4d7788b1
- Merge branch 'cdr3' - experimental '-3' option · 0cf35de8
  Mathieu Giraud authored Feb 17, 2015
  
  0cf35de8
- algo/vidjil.cpp: option '-3' to detect CDR3 (experimental) · 9f824625
  Mathieu Giraud authored Feb 17, 2015
  
  9f824625
- core/segment.cpp: remove duplicate lines · 159f8e88
  Mathieu Giraud authored Feb 17, 2015
  
  159f8e88
- segmenter.js : can do AA sequence + align · 0b53fa81
  Marc Duez authored Feb 17, 2015
  
  0b53fa81
- js/segmenter.js: '*' for stop codon · cdb25ed4
  Mathieu Giraud authored Feb 17, 2015
  
  cdb25ed4
- js/segmenter.js: computeAAseq, only if there is a cdr3 · 2750c402
  Mathieu Giraud authored Feb 17, 2015
```
We currently do not have an ORF detection, so we should not compute the AA unless the CDR3 is given.
```
  2750c402
- js/segmenter.js: computeAAseq, set 'start' and 'end' values · 1cfef95b
  Mathieu Giraud authored Feb 17, 2015
  
  1cfef95b
- js/segmenter.js: computeAAseq, translate to AA only between 'start' and 'stop' · bf373953
  Mathieu Giraud authored Feb 17, 2015
  
  bf373953
16 Feb, 2015 7 commits
- debug : · 7c8f49e6
  Marc Duez authored Feb 16, 2015
  
  7c8f49e6
- patient.py : debug · 26acc75f
  Marc Duez authored Feb 16, 2015
  
  26acc75f
- Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil into cdr3 · 182d4bb2
  Marc Duez authored Feb 16, 2015
  
  182d4bb2
- segment.js : align sequences with cdr3 if available · 9ae79296
  Marc Duez authored Feb 16, 2015
  
  9ae79296
- use cdr3 to help compute the AA sequence · a7b0948b
  Marc Duez authored Feb 16, 2015
  
  a7b0948b
- segment.js : improve potential field to highlight detection · ffe9f658
  Marc Duez authored Feb 16, 2015
  
  ffe9f658
- core : findCDR3 · e178ff4e
  Marc Duez authored Feb 16, 2015
  
  e178ff4e
13 Feb, 2015 11 commits
- views/*.html: remove 'multiple word' hint · 259fb38c
  Vidjil Team authored Feb 13, 2015
```
All the searches work (or should work) with multiple words :)
```
  259fb38c
- patient/permission.html: add 'id' column · b019bdfa
  Vidjil Team authored Feb 13, 2015
  
  b019bdfa
- modules/vidjil_utils.py: rewording · c65c19d9
  Mathieu Giraud authored Feb 13, 2015 and Vidjil Team committed Feb 13, 2015
  
  c65c19d9
- controllers/admin.py, views/admin/*: adds ASSIGNED stats, some rewording · b1851b27
  Mathieu Giraud authored Feb 13, 2015 and Vidjil Team committed Feb 13, 2015
  
  b1851b27
- controllers/admin.py: admin/monitor external monitor · bc9bce8f
  Mathieu Giraud authored Feb 13, 2015 and Vidjil Team committed Feb 13, 2015
```
We want to monitor externally the states of the workers.
```
  bc9bce8f
- file/add.html: help on formats · d2237b6c
  Mathieu Giraud authored Feb 12, 2015 and Vidjil Team committed Feb 13, 2015
  
  d2237b6c
- segmenter.js : compute AA sequence based on the cdr3 position · 89c9d040
  Marc Duez authored Feb 13, 2015
  
  89c9d040
- segmenter.js : add switch for amino <> nucleotide sequence · c0f4adc9
  Marc Duez authored Feb 13, 2015
  
  c0f4adc9
- css/index.html : highlight menu is now a feature reserved for admin · f7350091
  Marc Duez authored Feb 13, 2015
  
  f7350091
- segmenter.js : · 600f235e
  Marc Duez authored Feb 13, 2015
  
  600f235e
- css : improve style for highlighted sequence · 53667019
  Marc Duez authored Feb 13, 2015
  
  53667019
12 Feb, 2015 3 commits
- Merge branch 'master' of git+ssh://scm.gforge.inria.fr//gitroot/vidjil/vidjil · b3165c18
  Marc Duez authored Feb 12, 2015
  
  b3165c18
- css : add security >> focus div will be shrinked if we don't have enough space · b38ff103
  Marc Duez authored Feb 12, 2015
  
  b38ff103
- segment.js : add highlight menu to segmenter · 4a2584ef
  Marc Duez authored Feb 12, 2015
  
  4a2584ef