- 01 Apr, 2014 29 commits
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Mikaël Salson authored
Put tests specific to segmentation in testSegment()
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Mikaël Salson authored
Several features added (from CRAC's should-to-tap): - Can ignore any amount of whitespaces - Can require to match exactly a pattern (no regex: special characters are protected)
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
- Drag and drop possible to bring back undisplayed time/point inside
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
- possibilty to put away a point by drag and drop over label "others" - TODO a menu to take them back
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Mathieu Giraud authored
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Mathieu Giraud authored
Side effect: no 'clones.vdj.fa' and 'seq/*' files are produced. The 'vidjil.data' file is still produced.
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Mathieu Giraud authored
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Mathieu Giraud authored
This is the main Vidjil output (as a fasta file): representatives of the clones, ready to be processed by other tools. Until now, this output was on stdout and (partially) in out/seq/*
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Marc Duez authored
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Marc Duez authored
var t was the current position inside the time_order array now var t is just the current time and time_order is used only to draw graph
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Marc Duez authored
js : change method to compute min_size and precision, the min_size depends of the normalization, so we need to recompute min_size and precision value after each normalization
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Marc Duez authored
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Marc Duez authored
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Mathieu Giraud authored
Vidjil should not be used to segment reads.
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Mathieu Giraud authored
It could be nicer with python argparse :)
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Mathieu Giraud authored
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Marc Duez authored
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Marc Duez authored
so we need to call update_normalization if the time_order change or if the clone_size change
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Marc Duez authored
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Marc Duez authored
-update getSize family function in consequences
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
- click on a clone star icon to open tagSelector - input expected value for normalization - click normalize - magic happens
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duez authored
- adjust some javascript in consequences
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- 27 Mar, 2014 8 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
The threshold is a percentage, not a ratio.
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Mathieu Giraud authored
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Mathieu Giraud authored
('segmented.vdj.fa' may be not be the best filename choice, we should change it.)
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Mathieu Giraud authored
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Mathieu Giraud authored
'removeChevauchement' and possibly other infos
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- 26 Mar, 2014 2 commits
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Mikaël Salson authored
This is a file specific to each people. No reason for versioning
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Mikaël Salson authored
Because of the value for min_cover_representative that has changed (commit 4ee616a) the value computed in that case is now 4 instead of 5. So the representative is slightly longer which shifted the positions.
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- 25 Mar, 2014 1 commit
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Mikaël Salson authored
The library is now built in core, where we have the list of dependencies (dep.mk). Before dep.mk was in algo/ but the files it was refering to were in core/. Thus the dep.mk file was useless.
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