- 02 Jul, 2014 1 commit
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Mikaël Salson authored
When the sequence was not segmented, the reversed variable was not initialized. Then it was used in some functions, but without huge consequences…
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- 16 May, 2014 1 commit
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Mathieu Giraud authored
The function actually checks if there is a segmentation, including the main Vend/Jstart computation.
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- 27 Mar, 2014 2 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
'removeChevauchement' and possibly other infos
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- 20 Feb, 2014 1 commit
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Mathieu Giraud authored
* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp) * Removed unused html output * Better json output (core/json.cpp) * Updated main stdout, with representative sequence for each clone * Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost) * Bugs closed
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- 07 Oct, 2013 1 commit
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Mikaël Salson authored
* Better heuristic, segments more reads (core/segment.cpp) * Better and faster selection of representative read (vidjil.cpp, core/read_chooser.cpp) * Better display of reason of non-segmenting reads * New normalization against a standard (-Z) (core/labels.cpp) * New experimental lazy_msa multiple aligner * New .json output * New unit tests * Bugs closed
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- 03 Jul, 2013 1 commit
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Mathieu Giraud authored
* New selection of representative read (core/read_chooser.cpp) * Faster spaced seed computation (core/tools.cpp) * New unit tests * Bugs closed
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- 26 Apr, 2013 1 commit
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Mikaël Salson authored
* First public release
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