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Thanks to @mikael-s.

Reindent: Make the code more readable

See merge request !151

Cleaning some clustering aspects

See merge request !152

See #3033.

Closes #3033.

Now on should-get tests.
See #3033.

Give more auth information in the logs (for user/group creation/modification), and for the request analysis email.

Closes #2960

See merge request !143

See #3036.

Testing things in germlines (purposedly without md5).
See #3036.

J downstream sequences should also be gapped.
See #3002.

See #3034 and #3002.

See #3002.

If the wget or if the first tar fails, we should exit immediately and make
should know there was an error. Otherwise builds could appear as successful
while they were not.

Feature a/fix valgrind issues

See merge request !149

set_index() keeps track of the number of germlines refeering to it.
This is necessary so that the last germline destructor can actually
delete the index.

Memory is correctly free-ed with a return, while it is not with an exit.
Valgrind will thus complain when terminating the program with an exit()
this won't be the case with a return.

Add LIL-L4 demo sequences, 'make demo'

See merge request !147

Thanks to the previous commit of @mikael-s.

Mikaël Salson authored Jan 31, 2018 and Mathieu Giraud committed Feb 01, 2018

Useful so that make doesn't tell it has failed while it was just the file that
already existed

Mikaël Salson authored Jan 31, 2018 and Mathieu Giraud committed Feb 01, 2018

See !147

See #3003.