GitLab

-display only most recent results_file
-use only most recent result file for fuse

This was hardcoded twice in the code.

This feature was not documented and not used.
The browser offers better normalization features.

Bash automatically strips backslashes. So we need them to be escaped to ensure that one \ will
still be present.

analysis file data field must replace or complete the original data field ???

data list is just after the clone list

Fixed thanks to Valgrind.

This may help the upcoming modularization of vidjil.cpp

(Soissons)

This allows to remove any representative computation or fine segmenation with '-y 0' or '-z 0'.
Moreover, '-A' debug option now properly sets these two values.

Moreover, the argument 's' was not used

(Paris)

core/kmeraffect.{h,cpp}: remove 'kmer' argument to Kmer, KmerAffect and KmerStringAffect constructors

This argument was not used.
(Les Aubrais)

C++ polymorphism is awesome.
(Meung-sur-Loire)

AFFECT_AMBIGUOUS character is now '\1', in order to have a different value than AFFECT_UNKNOWN ('\0').

A IKmerStore maintains a list of labels that are used in the index.
This a step towards the removal of KmerStringAffect.