- 07 Nov, 2014 2 commits
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Mikaël Salson authored
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Mathieu Giraud authored
Now Vidjil may load .gz files.
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- 06 Nov, 2014 3 commits
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Mathieu Giraud authored
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Mikaël Salson authored
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Mikaël Salson authored
When exception is thrown from constructor, the destructor is not called
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- 05 Nov, 2014 6 commits
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Mikaël Salson authored
operator<< for Sequence already outputs one. No need to add another one
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Mikaël Salson authored
When the Sequence contains quality information, it outputs a FASTQ rather than a FASTA. This may be useful is one day we output FASTQ information (we never know, isn't it?)
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Mikaël Salson authored
An exception can be caught while an exit can't. Thus we can test it. Moreover some consistency is introduced: Fasta and OnlineFasta will throw a invalid_argument in case of problem with the input file (either in opening or parsing it).
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Mikaël Salson authored
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Mikaël Salson authored
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Mathieu Giraud authored
Corrects bug introduced by 59a1bcf6.
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- 04 Nov, 2014 3 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
core/fasta.{h,cpp}: default constructor also takes extract_field and extract_separator, factorize constructors Even if we start from an empty Fasta, we should remember these values.
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Mikaël Salson authored
The constructor now uses the add() method which, itself, relies on the >> operator which has been overloaded. Unit tests added for the add() method.
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- 23 Sep, 2014 1 commit
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Mikaël Salson authored
That solves signed/unsigned compilation warnings. This had no effect in practice but that makes the compiler happy.
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- 25 Jul, 2014 1 commit
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Mikaël Salson authored
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- 01 Jul, 2014 2 commits
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Mikaël Salson authored
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Mikaël Salson authored
Array was allocated at each call in next(). It is now free-ed when necessary
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- 26 Jun, 2014 1 commit
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Mathieu Giraud authored
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- 20 Feb, 2014 1 commit
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Mathieu Giraud authored
* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp) * Removed unused html output * Better json output (core/json.cpp) * Updated main stdout, with representative sequence for each clone * Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost) * Bugs closed
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- 03 Jul, 2013 1 commit
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Mathieu Giraud authored
* New selection of representative read (core/read_chooser.cpp) * Faster spaced seed computation (core/tools.cpp) * New unit tests * Bugs closed
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- 26 Apr, 2013 1 commit
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Mikaël Salson authored
* First public release
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