- 07 Nov, 2014 29 commits
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Mikaël Salson authored
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Mikaël Salson authored
istream initializes the buffer buf while gzstreambase constructor opens the file and may set some flags (in case the file can't be opened). If istream is called last it will overwrite the flags that have been set
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Now Vidjil may load .gz files.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mikaël Salson authored
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Marc Duez authored
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
Even if the CGI fails for an unknown reason we still have the content type, which should satisty the web server
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Mikaël Salson authored
I thought mkstemp would do that by itself. While it may seem not very satistfactory to hardcode the path, /tmp is POSIX.
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Marc Duez authored
pdf.js : debug default clone list for pdf > with multi-system the first 5 clone in the list can be unactive
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Marc Duez authored
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Mathieu Giraud authored
See 183ad875.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
This code was duplicated in 60a8bf4a.
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Mathieu Giraud authored
This test was already working, but threw an exception, and the test coverage could be ignored.
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Marc Duez authored
germline_builder : continue to build germline even if the system is not referenced in germlines.data (or if the browser can't access to germlines.data)
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Marc Duez authored
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Mathieu Giraud authored
Simplification of the code.
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Mathieu Giraud authored
Closes bug tested by 14b16e9c.
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Mathieu Giraud authored
Bug: With a reasonnably large -r option (such as 2000), no representative is found. This is because min_cover is larger than max_auditioned.
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Mathieu Giraud authored
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Mathieu Giraud authored
If -w is below the seed weight (hence the junction size), strange things may happen, as for example a clone without representative.
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- 06 Nov, 2014 11 commits
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Mathieu Giraud authored
Closes bug created by 59a1bcf6.
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Mathieu Giraud authored
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Mathieu Giraud authored
59a1bcf6 added some spurious output that breaks CGI. Thanks to @mikael-s for pointing that out.
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Mikaël Salson authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
fastaToJson.py : repair/update > python script, used to produce germline.js with fasta file from germline folder
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Marc Duez authored
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