1. 07 May, 2020 1 commit
  2. 30 Apr, 2020 1 commit
  3. 28 Apr, 2020 2 commits
  4. 26 Mar, 2020 1 commit
  5. 18 Oct, 2018 1 commit
  6. 10 Jul, 2018 1 commit
  7. 05 Jul, 2018 5 commits
  8. 23 Jun, 2018 1 commit
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  10. 06 Apr, 2018 1 commit
  11. 18 Jan, 2018 1 commit
  12. 17 Jan, 2018 1 commit
  13. 07 Mar, 2017 4 commits
  14. 27 Jan, 2017 1 commit
  15. 13 Jan, 2017 1 commit
    • Mikaël Salson's avatar
      tools: generate_all_seeds · 85455813
      Mikaël Salson authored
      Take a string and a seed (which spans the whole seed) and generates all
      the strings matching the input string with the seed.
      
      Tests included.
      85455813
  16. 28 Sep, 2016 1 commit
    • Mikaël Salson's avatar
      tools: Remove Ns at the end of a sequence · 2099c49f
      Mikaël Salson authored
      We remove the longest prefix (resp. suffix) ending with a
      N (resp. starting) whose N content is greater or equal to
      RATIO_TOO_MANY_N.
      
      This is particularly useful for the representative: because of spaced
      seeds we may have N in the representative, especially on the ends of the
      representative (when only one seed matched at the extremity of the
      sequence).
      2099c49f
  17. 27 Jun, 2016 1 commit
  18. 20 Jun, 2016 1 commit
  19. 28 Feb, 2016 2 commits
  20. 16 Jul, 2015 1 commit
  21. 12 May, 2015 1 commit
  22. 11 May, 2015 2 commits
  23. 03 Apr, 2015 1 commit
  24. 02 Apr, 2015 1 commit
  25. 01 Apr, 2015 1 commit
  26. 11 Mar, 2015 2 commits
  27. 22 Oct, 2014 1 commit
    • Mikaël Salson's avatar
      Tools: extract_basename() function · 9e39f012
      Mikaël Salson authored
      Extracts the basename of a path. There is a basename() function in C but takes char *
      (not even const char*), which is not convenient with string in C++.
      And basename() doesn't remove extension.
      
      Unit tests added.
      9e39f012
  28. 25 Jul, 2014 2 commits