1. 18 Dec, 2015 1 commit
  2. 17 Jul, 2015 1 commit
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  4. 15 Jun, 2015 2 commits
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  7. 09 Jun, 2015 1 commit
  8. 28 May, 2015 2 commits
    • Mathieu Giraud's avatar
      core/germline.cpp: insert D k-mers in the index · c23b5d20
      Mathieu Giraud authored
      There are sometimes common k-mers between D and V/J genes (this was at least
      the case for IGH with -t 0), and this may give badly positioned windows.
      Now all D k-mers are stored in the index, marking these k-mers as AMBIGUOUS.
      Note that it is the first time that the D germline is actually used in the KmerSegmenter.
      c23b5d20
    • Mikaël Salson's avatar
      algo/: Remove delta_max, use delta_min only in FineSegmenter. · d567545c
      Mikaël Salson authored
      delta_max is now useless. It was use to make sure we didn't segment
      something not robust enough. Now we use the e-value, which is a much
      trustable value.
      
      delta_min is useless to the KmerSegmenter (we can't have overlaps
      with the first_max, last_max algorithms).
      But it can still be useful to FineSegmenter, that's why we keep it.
      d567545c
  9. 15 May, 2015 2 commits
  10. 13 May, 2015 1 commit
  11. 12 May, 2015 1 commit
  12. 11 May, 2015 3 commits
  13. 08 May, 2015 1 commit
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  20. 26 Feb, 2015 4 commits
  21. 09 Feb, 2015 1 commit
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  23. 30 Jan, 2015 3 commits