1. 08 May, 2015 2 commits
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  5. 16 Apr, 2015 1 commit
    • Mathieu Giraud's avatar
      vidjil.cpp: default window is now 50, both for VJ and V(D)J recombinations · 2d80348c
      Mathieu Giraud authored
      Previously, the default -w was 40 for VJ, and 60 for V(D)J, except in
      multi-locus identification (-g), when it was 40 even for V(D)J recombinations.
      For the majority of cases, setting -w to 50 is thus more conservative.
      Many users already tested -w 50 (or the less conservative -w 40) for IGH and
      found correct results.
      
      Now we have a uniform window size for all locus, allowing a better indexing
      and comparison of windows across experiments and configurations.
      2d80348c
  6. 11 Apr, 2015 1 commit
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