1. 24 Mar, 2020 1 commit
  2. 24 Jan, 2020 1 commit
  3. 12 Mar, 2019 1 commit
  4. 04 Jul, 2018 1 commit
    • Cyprien Borée's avatar
      Add isGeneric and SPECIFIC_KMERS_NUMBERS in kmerAffect · 2f64e20b
      Cyprien Borée authored
      isGeneric is a method returning true if the current K-mer is not odd (ambiguous, unknown).
      It is used instead of calling successively isAmbiguous() || isUnknown()...
      
      SPECIFIC_KMERS_NUMBER is a constant representing the amount of odd K-mers. For now there is
      only two (ambiguous/unknown) but in the future it might grow.
      
      For more informations about it, see #3282.
      2f64e20b
  5. 25 Jun, 2018 3 commits
  6. 13 Jun, 2018 1 commit
  7. 13 Jan, 2017 8 commits
  8. 05 Jan, 2017 1 commit
  9. 18 Jun, 2016 2 commits
  10. 16 Jun, 2016 2 commits
  11. 04 Feb, 2016 1 commit
  12. 01 Apr, 2015 1 commit
  13. 06 Mar, 2015 1 commit
  14. 06 Feb, 2015 1 commit
  15. 31 Jan, 2015 2 commits
  16. 30 Jan, 2015 2 commits
  17. 13 Jan, 2015 1 commit
  18. 05 Nov, 2014 1 commit
  19. 01 Nov, 2014 1 commit
  20. 22 Oct, 2014 1 commit
  21. 20 Oct, 2014 2 commits
  22. 22 May, 2014 1 commit
  23. 16 Apr, 2014 1 commit
    • Mikaël Salson's avatar
      Affect: Bug correction regarding different strands with Kmer(String)Affect · 5f63020a
      Mikaël Salson authored
      When a k-mer, for the same label, is seen on both strand, we were (actually, I
      was) putting the + strand by default. But that's not robust to revcomp
      sequences. That explains some different results on strand + and strand - on
      very specific cases (mainly with small k).
      
      Results from test stanford-w100 is updated accordingly.
      5f63020a
  24. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee
  25. 26 Apr, 2013 1 commit