Commits · dc488e17b3840f9b83d09444c321483af3770ded · vidjil / vidjil

27 Nov, 2017 2 commits
- gosh-igh.should-vdj.fa: Correct assignation without homopolymer cost · dc488e17
  Mikaël Salson authored Nov 27, 2017
  
  dc488e17
- should-vdj-tests: Tag bugged sequences · 54693537
  Mikaël Salson authored Nov 27, 2017
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See previous commit
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  54693537
14 Feb, 2017 1 commit
- tests: remove BUG on nine curated-vdj tests that are now passing · cbcff399
  Mathieu Giraud authored Feb 14, 2017
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Some of them are now TODO.
Thanks to @mikael-s for remembering the semantics of BUG/TODO.
```
  cbcff399
10 Nov, 2016 1 commit
- gosh-igh.should-vdj.fa: Typo · 959c556b
  Mikaël Salson authored Nov 10, 2016
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IGHV3-15 is much worse than IGHV3-13
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  959c556b
24 Sep, 2016 1 commit
- tests: gosh-igh.should-vdj.fa: a failed IGH sequence (DJ instead of VDJ) due to -t 0 · ad4d0fd7
  Mathieu Giraud authored Sep 24, 2016
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This sequence, previously expertised in 84f2acae, fails since cd292aa0.
The tests are now passing.
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  ad4d0fd7
05 Aug, 2016 1 commit
- tests: gosh-igh.should-vdj.fa, typo · 81cdf7d9
  Mathieu Giraud authored Aug 05, 2016
  
  81cdf7d9
21 Apr, 2016 7 commits
- gosh-igh: the parser for the alternate syntax is now quite simple · e2612a8a
  Mathieu Giraud authored Mar 07, 2016
  
  e2612a8a
- gosh-igh: two possibilities · 1222b162
  Mikaël Salson authored Apr 14, 2016 and Mathieu Giraud committed Apr 21, 2016
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Whether you consider the mutation as being part of the V or not, you
have two possibilities.
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  1222b162
- gosh-igh: several possible recombinations · 84f2acae
  Mikaël Salson authored Apr 14, 2016 and Mathieu Giraud committed Apr 21, 2016
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Use the alternate syntax to take them into account
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  84f2acae
- gosh-igh: typo · 14847dd7
  Mikaël Salson authored Apr 14, 2016 and Mathieu Giraud committed Apr 21, 2016
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Deletion in 5'J is 5 instead of 6.
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  14847dd7
- gosh-igh: typo in sequence · 5522ae2f
  Mikaël Salson authored Apr 14, 2016 and Mathieu Giraud committed Apr 21, 2016
  
  5522ae2f
- gosh-igh: typo in N · 4b1c731a
  Mikaël Salson authored Apr 14, 2016 and Mathieu Giraud committed Apr 21, 2016
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Checked against germline
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  4b1c731a
- gosh-igh: 63 IGH sequences from GOSH hospital · 0a71a300
  Mathieu Giraud authored Feb 09, 2016
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48 VDJ sequences and 15 VJ/DJ/DDJ sequences, curated by Gary Wright
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  0a71a300