1. 14 Dec, 2016 1 commit
    • RyanHerb's avatar
      task.py defs.py.sample DIR_PEAR · d6726287
      RyanHerb authored
      Currently PEAR must be installed in a specific directory in order to be
      executed during pre-processes.
      Therefore adding a DIR_PEAR to the defs.py file will allow users to
      reference existing PEAR installations without the need for adding
      symbolic links to the vidjil installation.
      d6726287
  2. 03 Nov, 2016 1 commit
    • HERBERT Ryan's avatar
      task.py progressively delete fused_files · c23928ca
      HERBERT Ryan authored
      Fused_files were previously preserved from previous runs. However the
      decision has been made to no longer preserve these files as they do not
      serve the expected purpose.
      c23928ca
  3. 27 Oct, 2016 2 commits
  4. 21 Oct, 2016 1 commit
  5. 18 Oct, 2016 1 commit
    • Mikaël Salson's avatar
      models/task.py: Remove temporary fused file · 9c2f883a
      Mikaël Salson authored
      In case of success we can remove the file in the temporary directory as it is
      stored elsewhere through Web2py mechanism. Storing it twice was space
      consuming.
      
      We modifie the log message correspondingly so that it can display the real
      stored file.
      9c2f883a
  6. 07 Oct, 2016 1 commit
  7. 29 Sep, 2016 1 commit
    • Mikaël Salson's avatar
      models/task.py: run_copy takes name of the original filename · cf31f66a
      Mikaël Salson authored and Mathieu Giraud's avatar Mathieu Giraud committed
      run_copy copied the sequence file into the result file. But the filename used was the internal Web2py filename (which is quite long).
      And it was reencoded for the results_file which lead to a very long filename which was likely to exceed the limit of the
      filename length.
      Now we take the original filename for the data file, which will lead to a much shorter encoded filename
      cf31f66a
  8. 23 Sep, 2016 1 commit
    • HERBERT Ryan's avatar
      task.py separate germline folder · 223c9a49
      HERBERT Ryan authored and Mathieu Giraud's avatar Mathieu Giraud committed
      With the new vidjil packaging, the vidjil executable may not be situated
      in the vidjil directory. Therefore it has become necessary to add a
      separate DIR_GERMLINE variable to task.py which needs to be added to
      defs.py
      223c9a49
  9. 22 Sep, 2016 1 commit
  10. 19 Jul, 2016 1 commit
  11. 13 Jul, 2016 1 commit
  12. 08 Jul, 2016 1 commit
    • HERBERT Ryan's avatar
      default.py results_file.py task.py fix unfused runs · 2a954227
      HERBERT Ryan authored
      This commit resolves an issue where running a sequence file would not
      trigger the fuse on other sample sets.
      To achieve this fix, schedule run no longer depends on sample sets and
      database calls to fuse are done on each run_fuse
      2a954227
  13. 18 Jun, 2016 2 commits
  14. 14 May, 2016 2 commits
  15. 27 Apr, 2016 1 commit
  16. 22 Apr, 2016 2 commits
  17. 21 Apr, 2016 5 commits
  18. 18 Apr, 2016 1 commit
  19. 13 Apr, 2016 1 commit
  20. 04 Apr, 2016 1 commit
  21. 03 Apr, 2016 1 commit
  22. 09 Mar, 2016 4 commits
  23. 07 Mar, 2016 7 commits