1. 23 Jul, 2018 2 commits
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  13. 21 Jan, 2016 1 commit
    • Mikaël Salson's avatar
      bug: When adding some kmers prevent the sequence being segmented · cd0d2609
      Mikaël Salson authored
      When we have few kmers at the start, the sequence will be segmented
      (because first_pos_max is at the start of the sequence).
      
      On the contrary if we add some kmers of the same locus further in the sequence
      (in our case it is TGCTCCCCTA) the sequence won't be segmented because
      first_pos_max is much larger and it is likely that having so few kmers of the
      locus in such a large sequence is obtained by chance.
      
      Clearly there is a problem with the first sequence that should not be
      segmented: maybe the evalue should not be computed from position 1 to position
      1+first_pos_max ?
      cd0d2609
  14. 15 Sep, 2015 1 commit
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  18. 04 Jun, 2015 1 commit
  19. 24 Oct, 2014 1 commit
  20. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee