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Remove compiler warnings

See merge request !221

The relation between _SYMBOL and _CHAR was not clear and could be
ambiguous. This should clarify a little.

See #3250.

Feature a/3250 shift kmer ascii value for ambiguous and unknown

Closes #3250

See merge request !220

For more informations see #3250.

For more informations see #3250.

Since these two K-mers need to be printed with a different char, this char
is defined as a new macro used exclusively to represent the K-mer in a string.

For more informations see #3250.

For more informations see #3250.

Since the methods returns the same thing, the getLabel instructions can simply
return the toStringValues function result.

For more informations see #3250.

the toStringValues for those two K-mers must be '_' and '?' respectively.
Even though their char macro is 1 and 0 (non printable characters).

For more informations see #3250.

To fit issue #3250 the macros values were changed.
Char n°0 for ambiguous and char n°1 for unknown K-mer.

The only are .should-locus tests.

Close #3294.

Close #3287.

We now have a public Gitlab CI status.
See #3287.

Loading HTTP URL from the file menu

See merge request !210

Fix #3015

Use the macro UNUSED for mandatory parameters that are not
used within functions.

See #1233

Remove compiler warnings

See #1233

should@0ac73002

Resolve heuristic bug with overlapping k-mers

Closes #3296

See merge request !215

vidjil.cpp: refactor option handling using CLI11

Closes #2732, #2749, #2741, and #2738

See merge request !105

No process before its preprocess

Closes #3289

See merge request !209

Feature c/1943 correlate clones

See merge request !198

Mathieu Giraud authored Jun 04, 2018 and Mikaël Salson committed Jun 18, 2018

- as 'id' is defined and is not nucleic sequence, it is removed from highliting fields
- sortBySize changed due to change of read numbers

Mathieu Giraud authored Jun 04, 2018 and Mikaël Salson committed Jun 18, 2018

See #1943. Find perhaps a more relevant place.

Mathieu Giraud authored Jun 01, 2018 and Mikaël Salson committed Jun 18, 2018

See #1943.

Mathieu Giraud authored Jun 01, 2018 and Mikaël Salson committed Jun 18, 2018

See #1943.

See #3296