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moves the new patient/form and patient/submit routes to the sample_set
controller and removes any add/edit routes from all set controllers.
The same goes for the templates.

Also allows the inclusion of different types of sets in a single form.

For this, the sample_set/form.html template includes patials for each
set type.

See #2878

One form to rule them all, one form the find them, one form to bring
them all, and in the template bind them.

Makes use of more different classes to build different forms.

web2py Row objects are compatible with dot notation and getitem
notation, so dot notation is preferable in that case. However, we want
to be able to use dicts built from our json forms, so we need to use
getitem notation everywhere.

makes sure none of the elements from the header overlap into the main
content.

makes the refactored patient form extendable. With the serializeObject
method, form names can be used like array/object accessors and enables
complexe json objects to be built from the form and sent to the
controller.

See #2878

Having a single controller and view, is better for clean code practices,
since changes to the form/controller won't require two forms and
controllers to be changed.

So when the changes for the multi-patient form come in, we'll have less
to do and a cleaner code-bade to work from.

I also took the opportunity to build the from with divs rather than a
table since we're going to need a more flexible layout when the time
comes. Also less DOM nodes.

For adding files to sample_sets. Alters the existing id strings by
removing dates.
I wanted to clean things up a little and alter the way id_strings are
created/decoded before making them a little more flexible in order to
produce more aesthetically pleasing id_strings.

this is a refactor of anon_names. We want to use anon_names elsewhere
but without the id when the user is admin. display_names replaces
anon_names and behaves as anon_names did before.

set the cursor to a pointer when hovering the cross icon inside the
token span

See #2976

using CSS, hides the sample id string prefix and displays the full name
of the set type.

See #2981

this was css copied into our sass file. So it makes sense to make the
most of the sass syntax and nesting feature.

when highlighting a samle id string, we want it to match the colour of
the token that will be inserted.

See #2981

We are going to be using these again so we want a nice variable to make
things easier.

due to the differences with the matcher, the highlight regex was not
matching correctly, so the entered text was not easily apparent when
filtering sample id strings

sample identification strings contain dash-separated dates, so we need
to detect that when matching for autocompletion

prevents the token div from expanding too much and allows the token
spans to wrap within the parent div.

Making it clear when it is possible to click in order to start typing a
set token

Makes it look as though the tokens are inside some kind of textarea
rather than a separate div from the input.

removing the matcher function as well as the search value in the
beforeSave callback broke autocompletion.

The redirection at the end of the submission controller checks the
initial sample-set-type in order to redirect to the source sample-set.
But if the initial sample-set is removed from the list of sets to add a
sample to, then we need to ensure we still have a set to redirect to.

so we can remove tokens if a mistake is made.

rather than having a long string of id strings when adding a sample to
multiple sets, we now have spans that represent the set id strings and
the input is emptied after adding each set.

missing = sign meant no groups were entered for the autocompleted field.

Due to the lack of a flag to start matching text, it was necessary to
alter the matcher to allow us to start matching the last element in an
input without. The lack of a flag means that all the text in the input
is matched to the query and therefore we needed to extract the last
matching string to autocomplete.

altering the highlighter callback in order to accept brackets in the
regex. Otherwise, atwho would crash when attempting to highlight a query
containing brackets.

when adding there is obviously no file object to check.

The type identifier is designed to help with the search string, not
necessarily with the display of information

See #2895

forgot to add the file after creating it for the previous commit

Refactors the file add and edit forms into a single form, and implements
a single input for set selection when uploading files.

See #2896

Completes 42d81035.

Feature s/3055 fix log encoding

Closes #3055

See merge request !175

See #3055

See #3055