GitLab

Some analysis files contain a sample log entry. Added an exception to
the code to make sure this log does not replace the existing log as it
may be outdated

Resolved a bug where opening a result file to which all the
sequence files have been deleted caused a server error. Instead we load
the file as normal but without all the information that is stored in
the sequence_file entry in the database

'TRDV2 TRAJ29' should match 'TRDV2 13/CCCGAC/34 TRAJ29' (but not the opposite, unless -N is given)

Fix 1a02b2d8

Adding scripts for monitoring purposes

Safe encoding for first names and last names systematically.
Not only when we cannot view the full names.

Prefer using unicode(s).encode('utf-8') than unicode(s, 'utf-8'). Why? Don't know.

80eea121 could create problem in some situations [which ones?].
Now we try to encode in UTF-8 if it fails we let the string as is.

It can be (and will be) useful elsewhere.

gcov is now working on travis, but data are not properly sent to coveralls.
Landscape is working.

greatly reduce build time

https://github.com/eddyxu/cpp-coveralls/issues/64

as in algo/Makefile

Using partially http://stackoverflow.com/a/32127147 for g++-4.8
(but env: COMPILER=g++-4.8 seems not to work)

These tests were extended with many sequences that should be further checked.
Moreover they will be soon moved to their own git repository.
We have to find a new way to measure the quality of the build
even when some tests fail.

Contains sequences from other files (redundant)

Those files contain fake sequences.

TODO -> BUG.
TODO should be limited to sequences that have not been checked

Some of our users may use non-ascii charaters in patient names, therefore we
must make sure that the filename will be correctly encoded.

By the way, the useless commented code has been remove.

There are other places where it doesn't make sense (e.g. the run button)

Use box-shadow instead of border as a box-shadow doesn't take any space (thanks to http://stackoverflow.com/a/18841365/1192742).
For some reason the shadow on the right cannot be seen so we put it on the left of the N, the D and the J (only when they are preceded by a N).