HERBERT Ryan authored Jun 17, 2016 and Mikaël Salson committed Jun 18, 2016

Reduced the group list when adding a patient or run to include only the
user's personal group and parents of the user's other groups

HERBERT Ryan authored Jun 17, 2016 and Mikaël Salson committed Jun 18, 2016

Refactored get_user_groups to returns only direct links to users.
Added method to obtain all parent groups of user

It should be more efficient to compare affects directly rather
than having an implicit conversion followed by a comparison.
However are these functions really called often?

If we have access to a patient, we can download the sequences. But we can't
modify so don't show the modification icons.

HERBERT Ryan authored Jun 16, 2016 and Mikaël Salson committed Jun 18, 2016

Apply save analysis permission to save analysis and add checkbox in
group/info.html to add permissions save to a group

Removed can_process_file to replace with has_permissions

Added owner_group to run so that it is possible to affect a run to any
group the user is a member of. Select box is currently hidden and
selects the user_group by default unless the group Lille is in the list

Added a save permission and methods to check permission to determine if
a user can save an analysis for a patient, run or sample_set

group selector is now devel-mode. user group is selected by default unless Lille is in the list. In which case Lille is selected

file.py changed access on patients list to only require read on patient or run rather than admin. upload permission is still required

Replaced accessible_query with vidjil_accessible_query and replace
strings with PermissionEnum where appropriate

Add more default permissions to admin user to ensure access is granted to admins with the new permissions

There were several places in the code where strings were still used to
determine, add or remove permissions. These have now all been replaced
with the correct Element from PermissionEnum

VidjilAuth another issue related to the queries when no group_assoc exists. The query has been split to resolve this

Applied new methods to match patient query

Moved queries to controller from html file and added a groups parents to
the display in index

Due to an error in the queries in methods get_user_access_groups and
get_group_access_groups, the queries hae both been split into two
separate queries

tests/VidjilAuth fixed a bug where accessible_query would not return any values if there were no group associations

Removed some of the permissions displayed in the user profile since they
now are patient/run/sample_set specific