- 11 Mar, 2016 15 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
Affine gaps now accept a affine gap at the start of the alignment.
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Mathieu Giraud authored
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Mathieu Giraud authored
Bdel[i][j-1] is not the same than Bdel[i-1][j]
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Mathieu Giraud authored
We should never reach these values. It's good that the tests are passing with this commit.
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Mathieu Giraud authored
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Mathieu Giraud authored
B, Bins and Bdel were never initialized outside the first row and column. Even if this not really useful, this might be safer and help to find bugs.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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First and last letter are always aligned together, even if that doesn't make sense.
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HERBERT Ryan authored
Moved CDR3 checkbox out of devel-mode
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- 10 Mar, 2016 25 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
This was one of the discrepancies found by @mikael-s who discovered that while fixing browser unit tests
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Mikaël Salson authored
There were some discrepancies that made the situation ambiguous. Now we clearly state that positions must start at 1. The code is updated accordingly.
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Mikaël Salson authored
Positions start at 0, not 1
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Mathieu Giraud authored
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Mathieu Giraud authored
setAttribute, and not addAttribute, and further typo
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Mathieu Giraud authored
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Mathieu Giraud authored
The current colors were selected in d97cfefa in May 2014 and never changed. This highly debatable commit sets new colors and new rendering for V/D/J segments, with homogenous colors with the V/D/J segments highlighted when querying IMGT-VQUEST. The goal is both to improve the contrast between the segments and to be not too intrusive for the eye.
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HERBERT Ryan authored
This reverts commit 240b40ae. Commit broke several javascript tests
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Mikaël Salson authored
No need for the qualifier, it is already in the label. And the whole string was too long for the new interface
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Mikaël Salson authored
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Mikaël Salson authored
Information from seg is displayed (nt sequences extracted using start and stop). Some info can be omitted if needed
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Mikaël Salson authored
Several methods are defined to acces the seg fields. Hence the getCDR3length is useless now as the same can be achieved by calling getSegLength('cdr3').
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HERBERT Ryan authored
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HERBERT Ryan authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
When major clones are hidden (filtered out) the bars may be quite small making the differences hard to view. Now the scale of the bar plot is scaled depending on the active clones.
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Mikaël Salson authored
Color depending on the productivity of the sequence (found in the seg.junction.productive field)
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Mikaël Salson authored
The cdr3 field in seg is not anymore a string field but is similar to the other fields in seg. And we use the start and stop field to know the length of the CDR3 in nt.
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HERBERT Ryan authored
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HERBERT Ryan authored
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