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Thonier Florian authored Oct 11, 2018 and Mathieu Giraud committed Oct 16, 2018

link to #3054

flothoni authored Apr 27, 2018 and Mathieu Giraud committed Oct 16, 2018

With this script, we have the possibility to get structured datas from the pear preprocess to use them into the server, for quality, warning, ...
link to #3054 #3049 #3154

See vdj#530. To be decided and documented.

Closes #3549.

This will allow to more reliably add percentages that otherwise would give
meaningless results.

In the test we now have 497 reads out of 786861.

.gitlab-ci.yml docker tag reverse date and sha1

See merge request !326

For easier sorting
See #3551

.gitlab-ci.yml docker func tests restore http files

See merge request !324

when making the volumes for the conff directory the default, we were
overriding the baked-in http config files with the default https config
files.

Feature s/3489 fix multi upload edit

See merge request !300

Docker pre deploy

See merge request !304

Gestion des germlines et config dans docker

Closes #3521

See merge request !317

.gitlab-ci.yml also remove reporter images

See merge request !318

Resolve "Test serveurs unitaires cassés depuis 2 mois : 'init_db_helper' is not defined"

Closes #3470 and #3548

See merge request !321

Fixes #3470

Since 66a1edd4

This reverts merge request !196

ensure the germlines are included correctly in the docker images when
running server functional tests

for more consistant tests in the event of changes

for accessing the correct sample_set

add tests that ensure set associations behave correctly when editing a
sample.

See #3489

See #3489

The separator for set_ids loaded into the form when editing a sample
was not the expected separator, causing the form validation to only
detect on set whithin the field and removing all other set associations

See #3489

Ensure germlines aren't packaged in the server image. Use volumes and
symlinks so that it is no longer necessary to alter containers to add
germlines.

See #3521

.gitlab-ci.yml remove containers after func tests

See merge request !312

Feature c/notify server error

See merge request !136

Since two stages aren't necessrily executed on the same slave, we need
to build the image and push it in the same stage