- 16 Jul, 2018 1 commit
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Mathieu Giraud authored
See #3364.
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- 13 Jul, 2018 22 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mikaël Salson authored
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Mathieu Giraud authored
Use same sequences for all germlines Closes #3372 and #3373 See merge request !250
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Mathieu Giraud authored
Partially revert 806f2180. See #2645.
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Mathieu Giraud authored
We also want to be able to take sequences from NCBI and gap them. See #2645. Partially revert 806f2180.
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Mathieu Giraud authored
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Mikaël Salson authored
file.py form() remove a query See merge request !239
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Mikaël Salson authored
sample_set.py SampleSet.py fix sample_set sorting Closes #3359 See merge request !244
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Mikaël Salson authored
This allows to use IMGT sequences even for up and downstream sequences.
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Mikaël Salson authored
The messages are saved and displayed at the end to ease the analysis of those warnings.
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Mikaël Salson authored
We need to ignore case as well as dots that can be introduced by gapped sequences as well as comments that may be introduced by missing Phe.
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Mikaël Salson authored
Otherwise it creates .1, .2, … files
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- 12 Jul, 2018 17 commits
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Mikaël Salson authored
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Mikaël Salson authored
See #3356.
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Mikaël Salson authored
Between get_updownstream_sequences and get_gene_sequence
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Mikaël Salson authored
Ensure that this sequence is properly analysed.
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Mathieu Giraud authored
Feature a/3008 default j downstream See merge request !148
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Mathieu Giraud authored
Update doc See merge request !249
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Mikaël Salson authored
* CI has changed for a while * Compilation is now slightly different * No more Debian package
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Mikaël Salson authored
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Mikaël Salson authored
Test for #3008
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Mikaël Salson authored
Doesn't seem to be new
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Mikaël Salson authored
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Mikaël Salson authored
Seems to go back in terms of J affectations. May be due to vdj#692.
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Mikaël Salson authored
See #3315. This is unrelated to #3008.
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Mikaël Salson authored
Sequences are short (or very short): offer several alternatives
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See #3315.
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Mikaël Salson authored
TRGJ1*01 has one mutation while TRGJ2*01 hasn't. It's the only difference. TRGJ1*02 is even slightly better as it has no mutation too but fewer deletions at the 5' end.
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Mikaël Salson authored
This was detected because of #3148
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