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reference to id has changed in model, so this should fix the issue

Mikaël Salson authored Oct 02, 2016 and HERBERT Ryan committed Nov 07, 2016

At this point identity is a string, which cannot be NaN.
Therefore we start by converting the value to a float and
then we test whether is it NaN or not.

Mikaël Salson authored Oct 02, 2016 and HERBERT Ryan committed Nov 07, 2016

However the value may not be defined (when there are no indels),
in which case it is empty. In such a case we fallback to the
identity % without indels.

The 'smaller clones' were not displayed anymore since 2095ef31. This is fixed.

Thanks to landscape.io.

Thanks to landscape.io.

Thanks to landscape.io.

Thanks to landscape.io.

This is the case when compiling Vidjil from a fresh clone.

Shame on me. Fix c0bdefd2

Fix 223c9a49

Fix 9b3e08e6

Fused_files were previously preserved from previous runs. However the
decision has been made to no longer preserve these files as they do not
serve the expected purpose.

This reverts commit 0d40d04c.

The commit introduces a serious regression where some top clones would
be ignored. However the commit introduced an interesting feature, that
will be reintegrated (in a safer manner) in the future.

A large number of tasks were generated with the arrival of
pre-processing that simply indicated that vidjil could not yet be
started due to a pre-process having not yet finished. These tasks were
saturating the database and serve no purpose beyond the initial attempt
at launching Vidjil. This script deletes such scheduler_tasks and their associated
scheduler_uns.

In order to reduce the amount of queries to the database, the heartbeat
can now be set in the defs.py file.

Disk spce failsafe was failing in tests due to a folder being
non-existant.

The cluster is now closed by default in the list (since changes by @duez in
browser speed in mid August).

Mikaël Salson authored Oct 25, 2016 and Vidjil Team committed Oct 25, 2016

Since we just use the ID in the request, just retrieve it.
This is about a 2-fold increase in time.

Mikaël Salson authored Oct 25, 2016 and Vidjil Team committed Oct 25, 2016

Instead of filtering on patiend IDs after the request, filter directly
in the request using the belong operator.

For users with few patients, this makes a huge difference.

This is important as the alignment is computed with the first sequence as
the reference. The order must thus be perserved.

On the contrary, m.getSelected() doesn't ensure to preserve order.

Added email notifications to admins when disk space passes below the
allowed threshhold

This reverts commit 75e01801.

Due to an issue with self-signed certificates in the python ssl library,
https has been put off for the custom fuse.

Mikaël Salson authored Oct 21, 2016 and Vidjil Team committed Oct 21, 2016

Fix e3bdc9fc.
The field must still appear in the form for the value
to be sent to the server. Now the field is just hidden.

Thanks to @RyanHerb for pointing out that issue.

I'm glad when I succeed to spot typos coming from English people ;)

For users having only one group (the huge majority), there
is no need to add fields they won't be able to modify

mail variable from db model not available here. Temporarily disable
notification email.