- 21 Apr, 2015 10 commits
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Mikaël Salson authored
Better tracability, and useful when we need to cite the germline that has been used.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Vidjil Team authored
Thank you www.fontello.com
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Mathieu Giraud authored
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- 20 Apr, 2015 5 commits
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Tatiana Rocher authored
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Marc Duez authored
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Tatiana Rocher authored
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Tatiana Rocher authored
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- 17 Apr, 2015 9 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
And correctly initialize 'because' in segment.cpp
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Mathieu Giraud authored
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Mathieu Giraud authored
Now the stats on each locus are the number of segmented reads with windows. This is more coherent with the rest of the stats (in particular the reads/clones ratio).
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Mathieu Giraud authored
To be too short for the window is just a non-segmentation/non-analysis cause.
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- 16 Apr, 2015 12 commits
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Mathieu Giraud authored
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Marc Duez authored
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Marc Duez authored
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Vidjil Team authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Previously, the default -w was 40 for VJ, and 60 for V(D)J, except in multi-locus identification (-g), when it was 40 even for V(D)J recombinations. For the majority of cases, setting -w to 50 is thus more conservative. Many users already tested -w 50 (or the less conservative -w 40) for IGH and found correct results. Now we have a uniform window size for all locus, allowing a better indexing and comparison of windows across experiments and configurations.
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- 15 Apr, 2015 4 commits