Commits · a85080bf781ef6acd7423eca30b120140ceb93e3 · vidjil / vidjil

31 Oct, 2017 1 commit
- tools/align.cpp: keep the previous cost output for tools/align · a85080bf
  Mathieu Giraud authored Oct 31, 2017
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See #2076.
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  a85080bf
19 Oct, 2017 5 commits
- align.cpp: CLI11, help strings, clean old usage string · 2763314f
  Mathieu Giraud authored Oct 19, 2017
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Welcome to C++11 raw litterals.
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  2763314f
- align.cpp: CLI11, some group · b062a5c8
  Mathieu Giraud authored Oct 19, 2017
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See #926.
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  b062a5c8
- align.cpp: CLI11, when file2 is not there, take file1 twice · 39d12eda
  Mathieu Giraud authored Oct 19, 2017
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See #926.
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  39d12eda
- align.cpp: CLI11, file1 is required, not file2 · f3b8325d
  Mathieu Giraud authored Oct 19, 2017
  
  f3b8325d
- align.cpp: CLI11, display default values in -h · 550a6cd0
  Mathieu Giraud authored Oct 19, 2017
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See #926.
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  550a6cd0
18 Oct, 2017 2 commits
- align.cpp: remove docopt, use CLI11 · 51b9caa6
  Mathieu Giraud authored Oct 18, 2017
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See #926.
The two positional arguments file1 and file2 are now mandatory.
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  51b9caa6
- tools/align.cpp: fix in output · 9b6ac274
  Mathieu Giraud authored Oct 18, 2017
  
  9b6ac274
07 Jul, 2017 1 commit
- tools/{align,vdj_assign.cpp}: Use BioReader instead of Fasta · 5ac6f4b9
  Mikaël Salson authored Jul 07, 2017 and Mathieu Giraud committed Jul 07, 2017
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Following changes with #2016. Closes #2551.
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  5ac6f4b9
15 May, 2015 1 commit
- tools/align.cpp: Removed Costs that don't exist anymore in core/dynprog.h · d6d0e218
  Mikaël Salson authored May 15, 2015
  
  d6d0e218
20 Apr, 2015 1 commit
- align.cpp: testing core/dynprog.cpp, re-write using docopt · c9a459d1
  Mathieu Giraud authored Feb 07, 2015
  
  c9a459d1
03 Jul, 2014 2 commits
- tools/align.cpp: fix includes · 1c25fc98
  WebTogz authored Jul 03, 2014
  
  1c25fc98
- core/: fix Levenshtein's name · cfe8f633
  WebTogz authored Jul 03, 2014
  
  cfe8f633
20 Feb, 2014 1 commit

Vidjil: release 2014.02 · 113ee8ee

Mathieu Giraud authored Feb 20, 2014

	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
	* Removed unused html output
	* Better json output (core/json.cpp)
	* Updated main stdout, with representative sequence for each clone
	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
	* Bugs closed

113ee8ee

26 Apr, 2013 1 commit
- Vidjil: release 2013.04 · 9387e03a
  Mikaël Salson authored Apr 26, 2013
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	* First public release
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  9387e03a