- 01 Apr, 2019 4 commits
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Mathieu Giraud authored
Following should#43, we cannot anymore use 'B' here.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 28 Mar, 2019 9 commits
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Mathieu Giraud authored
Feature a/fix min cover representative See merge request !448
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Mathieu Giraud authored
Correct upload menu Closes #3805 See merge request !452
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
In such a case we are clicking on the clone. If the mouse is not on hovering the clone there is no reason for its name to appear in the infoline. And the hovering is already tested.
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
Resolve "Clone en R2 perdu en R1+R2 (+R2)" Closes #3879 and #3833 See merge request !453
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- 27 Mar, 2019 1 commit
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- 26 Mar, 2019 1 commit
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Mikaël Salson authored
This requires to reorder elements in the HTML. Thus they are now in a 'natural' order (ie. in the same order as displayed). We use flex to make them appear contiguously the ones after the other. Thus we don't need anymore float: right apart from the #menu_right_part that was added. Fix #3805
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- 22 Mar, 2019 3 commits
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Mikaël Salson authored
Following the fix on min_cover_representative. The representative on small datasets may be longer. Thus we need to update those. There also some side effects: - V genes are less ambiguous (hence less warnings) - Consensus is longer (hence less warnings too) - Positions changes of end of V, J, CDR3…
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Mikaël Salson authored
Checks previous commit
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Mikaël Salson authored
min_cover_representative should be seen as a strict minimum on the number of reads that can support a representative sequence. The purpose is to avoid a too low ABSOLUTE number of reads to define a representative. For the relative number, it is ratio_representative's role. Before, if we specified -r 100 we needed to have 100 corresponding k-mers which is very strict when a clone has just slightly more than 100 reads
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- 21 Mar, 2019 10 commits
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Mikaël Salson authored
Update CLI11 See merge request !445
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Mathieu Giraud authored
Update tutorial See merge request !447
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
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Mathieu Giraud authored
Better than what was done in 5359314cb.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Same spirit than 7130f076 and 87b23f58 on updated upstream. We should discuss and/or make a pull request to upstream, see #3854.
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Mathieu Giraud authored
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- 20 Mar, 2019 5 commits
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Mathieu Giraud authored
Better logs See merge request !444
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
The parameter can be a dictionary when the dictionary has a success and message key.
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Mikaël Salson authored
We can have a debug output but being in this function is not an error. Moreover we can't pass a dictionary to the log.
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- 18 Mar, 2019 7 commits
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Mikaël Salson authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Put pointer cursor on icons Closes #3808 See merge request !441
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Mathieu Giraud authored
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Mathieu Giraud authored
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