GitLab

Link to #3867

Files are required to submit new samples

Closes #3907

See merge request !613

Resolve "Documentation docker; dev en local"

Closes #4210

See merge request !619

Link to #4210

retrieve_patient_data.py: Script used to export some filtered patient data

See merge request !616

See for instance vidjil/support/aphp#1

We don't want to allow launching an analysis while one of the file is still uploading (which is the
case with a pre-process with two files). Thus to be able to launch a process we expect either
to have no pre-process or to have one but already finished. We allow to launch a process even
if the pre-process failed to prevent the user from being blocked (he/she can still analyse
the R1 file).

See #3907

But this need to be updated (Javascript side) when switching configuration.

See #3907

doc: Wrong assertion on IMGT productivity computation

See merge request !611

See discussion in !520

Merge branch 'feature-c/4181-des-clones-segedited-avec-de-nouvelles-germline-bloque-l-interface' into 'dev'

Resolve "Des clones segedited avec de nouvelles germline bloque l'interface"

Closes #4181

See merge request !602

Merge branch 'dev' of gitlab.inria.fr:vidjil/vidjil into feature-c/4181-des-clones-segedited-avec-de-nouvelles-germline-bloque-l-interface

doc/.gitlab-ci.yml: revert alltogether only:changes

See merge request !609

doc/.gitlab-ci.yml: revert only: refs: merge_requests

See merge request !608

Reverts 884d341c / !586 until we find how to handle properly #4197

Add a test on clone with a particular germline not already present in the clone list
Link to #4181

More flexible upstream/downstream length

Closes #3133

See merge request !606

Closes #3133.

Use awk rather than awk to output the sequence. With grep we need to know on
how many lines the gene is, while it is not necessary with awk (albeit somehow
more complicated).

It can now be much higher as we make sure not to overlap another gene.

See #3133

Compute the mininmal length between genes from a given locus to know how far
we can go for upstream and downstream sequences.

Fix #3133

Add a test with constant gene in the sequence to check we detect it

See merge request !604

doc/.gitlab-ci.yml: deploy_doc

Closes #4143

See merge request !597

Backup of the current day only (and of yesterday)

See merge request !605

This will allow more lightweight backup strategies

See vdj#96

See #2964

Link to #4181

Resolve "fichier vidjil avec clone null"

Closes #4172

See merge request !599

Link to #4172

mkdocs.yml: reorganize doc

Closes #4143

See merge request !583

Feature c/auto resize

See merge request !598

This can happen when vidjil is launched with '--no-clone' arg, or when no clone are founded
Link to #3861

older browser does not support observer methods, use a setInterval recurrent check instead

-add an observer on view and resize on change
-use a 500ms delay