GitLab

We just want to check whether the good number of reads has been considered.

-put font-family in parameters
-remove/override interactive elements/css

server/file.py : update file controller and view to handle multiple file upload and pre-process field

css removed z-index from info textareas to prevent it overlapping the menu in certain versions of Mozilla

Fixed a bug where attempting to view a multi-sample run would crash if
other files were currently running

Due to a recent change in the file upload form, the contents of the file
was added to the controller request.vars. This had a considerable effect
on the speed when accessing the request vars in the controller.
The change has been reverted to restore file upload performance.

Switched order of these two operations.
The reason being that initClones() is now responsible for calling a
conversion function on clone seg information in order to maintain
support for older files after the standard for seg definition has been
changed.
loadGermline() depends on seg information to determine which axis should
be created and its label.

Added missing identifier for a value check on gene name

the format of seg is being changed to align all elements to the same
standard. Each element will now fall in line with the standard defined
for cdr3 and junction.

Added functions to support files with the older format for seg alongside
the new format

The counting for sequence files and result files had not been updated
when switching to the sample_set format.
The correct values are now displayed when deleting a patient.

Fixed a bug where flash priority was never redefined from the original
message in which the priority could be undefined.

Wrapping large sections of code in the key areas such as initialisation
and update locations in order to catch client-side errors and report
them to the server.