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Mikaël Salson authored Nov 27, 2014 and Vidjil Team committed Nov 27, 2014

The reason is not clear. But it avoids web2py complaining about not knowing format_size

These options do not exist anymore.

Mathieu Giraud authored Nov 26, 2014 and Vidjil Team committed Nov 26, 2014

- factorize messages in myConsole.msg.database_timeout
- set timeouts to at least 5000 (but some others are 15000, this should be defined somewhere in a unique place)
- set priority to 1 for non-critical message (access to .data and .analysis)

Mathieu Giraud authored Nov 26, 2014 and Vidjil Team committed Nov 26, 2014

When one plays with multi-system files, one often deselects all systems.
We do not want to see a 'red' warning in this case.

To keep the previous results, one should here select the IGH default seed.

Additionally, one test has a different output due to a previously forgotten '-d' option.

This option was again source of confusion (running Vidjil without options was anyway non meaningful).
Now a V(D)J segmentation is run when a compatible germline is given (-D, -G, or -g),
and the correct D parameters are selected.

This was source of confusion, in particular in selecting or not D parameters.
Now the code is cleaner.

Use the power of emacs and org-mode to produce HTML files from Org files

Filesize is given in bytes (B) not in octets ;)
And the K, M, G prefixes are international standards for
10^3, 10^6 and 10^9 not 2^10, 2^20 and 2^30 ;)