1. 22 Mar, 2019 40 commits
    • Mikaël Salson's avatar
      algo/tests: Update tests on representative · 903430f8
      Mikaël Salson authored
      Following the fix on min_cover_representative.
      The representative on small datasets may be longer.
      Thus we need to update those. There also some side effects:
      - V genes are less ambiguous (hence less warnings)
      - Consensus is longer (hence less warnings too)
      - Positions changes of end of V, J, CDR3…
    • Mikaël Salson's avatar
      algo/tests: Add test on min_cover_representative · 77e91ad1
      Mikaël Salson authored
      Checks previous commit
    • Mikaël Salson's avatar
      vidjil.cpp: Fix definition of min_cover_representative · 5c9296f9
      Mikaël Salson authored
      min_cover_representative should be seen as a strict minimum on the number of reads
      that can support a representative sequence.
      The purpose is to avoid a too low ABSOLUTE number of reads to define a representative.
      For the relative number, it is ratio_representative's role.
      Before, if we specified -r 100 we needed to have 100 corresponding
      k-mers which is very strict when a clone has just slightly more than
      100 reads
  2. 20 Mar, 2019 40 commits
  3. 18 Mar, 2019 40 commits
  4. 17 Mar, 2019 40 commits
  5. 15 Mar, 2019 40 commits
  6. 14 Mar, 2019 40 commits