- 02 Apr, 2014 3 commits
- 01 Apr, 2014 37 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Marc Duez authored
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Marc Duez authored
- button added to list_menu
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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Mikaël Salson authored
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Mikaël Salson authored
This test is a real recombination and should be properly segmented
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Mikaël Salson authored
No reason to have separate (hard-coded) constants for delta_max. Now we just have one.
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Mikaël Salson authored
Put tests specific to segmentation in testSegment()
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Mikaël Salson authored
Several features added (from CRAC's should-to-tap): - Can ignore any amount of whitespaces - Can require to match exactly a pattern (no regex: special characters are protected)
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
- Drag and drop possible to bring back undisplayed time/point inside
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
- possibilty to put away a point by drag and drop over label "others" - TODO a menu to take them back
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Mathieu Giraud authored
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Mathieu Giraud authored
Side effect: no 'clones.vdj.fa' and 'seq/*' files are produced. The 'vidjil.data' file is still produced.
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Mathieu Giraud authored
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Mathieu Giraud authored
This is the main Vidjil output (as a fasta file): representatives of the clones, ready to be processed by other tools. Until now, this output was on stdout and (partially) in out/seq/*
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Marc Duez authored
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Marc Duez authored
var t was the current position inside the time_order array now var t is just the current time and time_order is used only to draw graph
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Marc Duez authored
js : change method to compute min_size and precision, the min_size depends of the normalization, so we need to recompute min_size and precision value after each normalization
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Marc Duez authored
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Marc Duez authored
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Mathieu Giraud authored
Vidjil should not be used to segment reads.
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Mathieu Giraud authored
It could be nicer with python argparse :)
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Mathieu Giraud authored
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Marc Duez authored
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Marc Duez authored
so we need to call update_normalization if the time_order change or if the clone_size change
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Marc Duez authored
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Marc Duez authored
-update getSize family function in consequences
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Marc Duez authored
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Marc Duez authored
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Marc Duez authored
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