- 17 Oct, 2015 4 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 14 Oct, 2015 1 commit
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Mikaël Salson authored
Makes it more robust to changes in make utility
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- 07 Oct, 2015 4 commits
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Mathieu Giraud authored
Now all should-vdj tests are also run on the rev-comped sequences. This increases the test time, but improves our robustness.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
The 4 sequences added in 6503f6ae now give correct results. All the 68 (now 72) test sequences are now passing on both strands.
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- 06 Oct, 2015 2 commits
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Mathieu Giraud authored
68 sequences are currently passing tests. Rev-comping these sequences ('python should-vdj-to-tap.py -r'), the tests fail on these 4 sequences.
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Mikaël Salson authored
Differs on + and - strand. Incorrect on both
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- 04 Oct, 2015 2 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
Since the 2015.07 release, many changes improved the V(D)J designation (core/segment.cpp, in particular c5c781ec, 77af56b8, 185c3bd9, 60a15629), and this is now better tested (.should-vdj.fa tests, with new curated sequences and an improved test mechanism).
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- 03 Oct, 2015 3 commits
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Mathieu Giraud authored
This was a bug hidden since the first release of Vidjil. It is now corrected, and the test added in 002adbd2 is now passing.
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 29 Sep, 2015 1 commit
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Mathieu Giraud authored
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- 25 Sep, 2015 9 commits
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Mathieu Giraud authored
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Tatiana Rocher authored
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Mathieu Giraud authored
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Tatiana Rocher authored
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Tatiana Rocher authored
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Mathieu Giraud authored
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Yann Ferret authored
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Yann Ferret authored
This test was not passing 10 days ago, before the work on close V-J xxx
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Mathieu Giraud authored
When entering mnaually curated sequences, this is faster than launching a full 'make shouldlocus_and_vdj' (which further recompiles everything).
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- 23 Sep, 2015 9 commits
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florian.thonier authored
add 6 errors : - 2 double DD - 3 ambigous - 1 real error (the TRB error)
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Mathieu Giraud authored
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Mathieu Giraud authored
Handle '[xxx]' locus information.
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Mathieu Giraud authored
Completes a36f0231.
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Mathieu Giraud authored
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Mathieu Giraud authored
The actual command line is stored in the .log file.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Tests marked with 'TODO' are expected to fail. Such tests do not trigger an error exit code, and the 'TODO' keyword is output in the corresponding line of the .tap file.
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- 18 Sep, 2015 5 commits
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florian.thonier authored
After correction, only 3 errors stay : - 2 DD2-DD3 not seen - 1 ambigous case
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Mathieu Giraud authored
.should-vdj tests can now be given with spaces instead of underscores.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
It is better to segment the first sequence without D.
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