GitLab

added instruction to initialize database and first user. fixed some mistakes and added some symlinks I believe are needed

One may give a -X option greater than the number of input sequences,
as in should-vdj-to-tap.py (7305d28a). This now works.

vidjil.cpp, core/fasta, core/windowExtractor: -x/-X options work everywhere, especially with '-c segment'

The handling of these options was moved from WindowExtractor to OnlineFasta.
This push was sponsored by E. Macron.

Unit testing was a good idea: it discovered a bug that is now corrected.
When using 'only_nth_sequence', we must call hasNextData().

core/windowExtractor.{h,cpp}, vidjil.cpp: do not handle anymore -x/-X options inside WindowExtractor

Makes it more robust to changes in make utility

Now all should-vdj tests are also run on the rev-comped sequences.
This increases the test time, but improves our robustness.

The 4 sequences added in 6503f6ae now give correct results.
All the 68 (now 72) test sequences are now passing on both strands.

This link is not visible for users now.

68 sequences are currently passing tests.
Rev-comping these sequences ('python should-vdj-to-tap.py -r'), the tests
fail on these 4 sequences.

Differs on + and - strand. Incorrect on both