Commits · 8bc797d36b9f30cdd1c9af408406c5835e2adbf7 · vidjil / vidjil

19 Apr, 2019 1 commit
- tests: remove $VIDJIL_DEFAULT_OPTIONS when it is it in the first place · 8bc797d3
  Mathieu Giraud authored Apr 19, 2019
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see #3762
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  8bc797d3
18 Apr, 2019 1 commit
- algo/tests: rename *.should-get tests to *.should · ebb59d2f
  Mathieu Giraud authored Apr 18, 2019
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see #3206
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  ebb59d2f
11 Mar, 2019 1 commit
- tests: --grep-reads · d05b8ed1
  Mathieu Giraud authored Mar 11, 2019
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See #3785.
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  d05b8ed1
08 Mar, 2019 1 commit

Mathieu Giraud authored Mar 08, 2019

Use the new option names.
Remove also '--trim 0' options used in some tests.

See #3295.

2900822b

10 Jan, 2018 1 commit
- tests, should-to-tap.sh: vidjil-algo through an $EXEC variable · 6e18874d
  Mathieu Giraud authored Jan 10, 2018
  
  6e18874d
15 Sep, 2017 1 commit
- should-get-tests/*.should-get: replace $VIDJIL_DIR/data by $VIDJIL_DATA · 880abf7d
  Mathieu Giraud authored Sep 13, 2017
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See #2611.
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  880abf7d
16 Mar, 2017 1 commit
- tests: faster tests · 291a1eeb
  Mathieu Giraud authored Mar 16, 2017
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See #2254.
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  291a1eeb
01 Feb, 2017 1 commit
- tests: update tests, -G/IGH -> -g:IGH · 7309e252
  Mathieu Giraud authored Feb 01, 2017
  
  7309e252
31 Jan, 2017 1 commit
- tests: update tests · beaed38d
  Mathieu Giraud authored Jan 31, 2017
  
  beaed38d
13 Jul, 2016 1 commit
- should-get: Add possibility to provide default option to launch Vidjil · 99f9172d
  Mikaël Salson authored Jul 13, 2016
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This will help testing the effect of some parameter on all the functional tests.
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  99f9172d
01 Mar, 2016 2 commits
- tests: should-get-tests, replace '../..' with '$VIDJIL_DIR' · 17ef48f1
  Mathieu Giraud authored Mar 01, 2016
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This will be more flexible.
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  17ef48f1
- tests: move should_get tests to their own directory · 6acbe89d
  Mathieu Giraud authored Mar 01, 2016
  
  6acbe89d
11 May, 2015 1 commit
- tests: for now, stanford-labels-FaW.should_get does not pass with -t 100 · 3e6ace07
  Mathieu Giraud authored May 11, 2015
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This should be investigated.
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  3e6ace07
08 May, 2015 1 commit

tests: update tests stanford-labels{,-W,-FaW}.should_get for default -w 50 · ef0e2f3f

Mathieu Giraud authored May 08, 2015

The purpose of these tests is to check whether the reads with labeled windows
are kept, and not to test the VDJ segmentation on these difficult reads.

ef0e2f3f

28 Apr, 2015 1 commit
- tests: '-FaW' combo, extracting reads having a known window · 57bc9a2c
  Mathieu Giraud authored Apr 28, 2015
  
  57bc9a2c