- 02 Aug, 2016 2 commits
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Mathieu Giraud authored
This is quadratic, both in time and in space in the .vidjil output.
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The Vidjil Morning failed sometimes.
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- 29 Jul, 2016 6 commits
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Mathieu Giraud authored
This is our user manual. We do not mention 'browser' anywhere in this documentation except while referring to web browsers.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Some information was scattered in the previous organization. This file is now the central place to store *developer* information. We may one day re-split this documentation into several files.
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Mathieu Giraud authored
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Mathieu Giraud authored
Some external tools would like to provide sequence features with textual information. Discussion with @flothoni and @duez.
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- 28 Jul, 2016 1 commit
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Mathieu Giraud authored
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- 26 Jul, 2016 10 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
'stop' positions are included in the highlight (5e21e0).
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Mathieu Giraud authored
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Mathieu Giraud authored
Checked on Demo-X5 both on 2016.03 and 2016.07 outputs (that are both 1-based), and both on 'cdr3' (computed with -3) and 'id' fields.
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Mathieu Giraud authored
This should be an old file.
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Mathieu Giraud authored
Now the tests added in the previous commit are working.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Using the same object is not good (at least for tests) since we shift his position towards 0-based.
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Mathieu Giraud authored
All fields go now through a 1-based -> 0-based transformation. Howvever, we now do the reverse transformation for 5/4/3 fields (old 5/4/3 fields were 0-based).
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- 25 Jul, 2016 4 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
This will allow somewhat large sets of reads.
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Mathieu Giraud authored
A @rchikhi set with ~150M reads tested with all locus gave an e-value multiplier >2^31, leading to integer overflow and many spurious clones. Moreover, the previous multiplier was only an 'int', depending on the actual implementation. The multiplier is now a float (double) value.
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Mathieu Giraud authored
Thanks for @rchikhi for pointing this out.
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- 21 Jul, 2016 2 commits
- 19 Jul, 2016 1 commit
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- 15 Jul, 2016 5 commits
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Mikaël Salson authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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- 13 Jul, 2016 9 commits
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Mathieu Giraud authored
The other files are generated through a 'make' in tools/tests
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We want to be able to retrieve the last fuses on every sample set
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
Follows 7b955792
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Mikaël Salson authored
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Mikaël Salson authored
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English and French versions
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Mathieu Giraud authored
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