1. 22 Oct, 2014 1 commit
    • Mikaël Salson's avatar
      Vidjil: change output filenames · 756ef3c2
      Mikaël Salson authored
      * .data files are renamed to .vidjil
      * by default output filenames have the same basename as the input file
      
      Documentation and tests have been updated accordingly
      756ef3c2
  2. 20 Oct, 2014 1 commit
  3. 10 Oct, 2014 1 commit
  4. 02 Oct, 2014 1 commit
  5. 26 Sep, 2014 3 commits
  6. 24 Sep, 2014 3 commits
  7. 23 Sep, 2014 1 commit
  8. 09 Sep, 2014 1 commit
  9. 05 Sep, 2014 7 commits
  10. 29 Aug, 2014 2 commits
  11. 25 Jul, 2014 1 commit
  12. 01 Apr, 2014 1 commit
  13. 27 Mar, 2014 2 commits
  14. 25 Mar, 2014 1 commit
  15. 19 Mar, 2014 2 commits
  16. 05 Mar, 2014 1 commit
  17. 28 Feb, 2014 1 commit
  18. 20 Feb, 2014 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2014.02 · 113ee8ee
      Mathieu Giraud authored
      	* Refactored main vidjil.cpp (core/windows.cpp, core/windowExtractor.cpp)
      	* Removed unused html output
      	* Better json output (core/json.cpp)
      	* Updated main stdout, with representative sequence for each clone
      	* Updated parameters for FineSegmenter (delta_max) and dynprog (substition cost)
      	* Bugs closed
      113ee8ee
  19. 07 Oct, 2013 1 commit
    • Mikaël Salson's avatar
      Vidjil: release 2013.10 · 2cbd3725
      Mikaël Salson authored
      	* Better heuristic, segments more reads (core/segment.cpp)
      	* Better and faster selection of representative read (vidjil.cpp, core/read_chooser.cpp)
      	* Better display of reason of non-segmenting reads
      	* New normalization against a standard (-Z) (core/labels.cpp)
      	* New experimental lazy_msa multiple aligner
      	* New .json output
      	* New unit tests
      	* Bugs closed
      2cbd3725
  20. 03 Jul, 2013 1 commit
    • Mathieu Giraud's avatar
      Vidjil: release 2013.07 · de4c48e0
      Mathieu Giraud authored
      	* New selection of representative read (core/read_chooser.cpp)
      	* Faster spaced seed computation (core/tools.cpp)
      	* New unit tests
      	* Bugs closed
      de4c48e0
  21. 26 Apr, 2013 1 commit