GitLab

We can now create a Germline object without any index.

@duez worked a lot to implement the new .data format, described in doc/format-analysis.org
Behind, the access to the objects in the .js code have been streamlined.

Merge branch 'rework_data' of git+ssh://scm.gforge.inria.fr//gitroot//vidjil/vidjil into rework_data

- load cluster from data file
- detect missing windows

If there a '-g' option, we do not have to open default '-V'/'-D'/'-J' files.

This option is now undocumented, its use will change in a future release.

Reverts partially commit 9e7678b9.

This reverts commit 88044a01.
We do not want to chdir, the user may legitimately want to run vidjil from any directory.

-debug problem with relative path hard-coded in vidjil
-if you want to give a relative path in vidjil command imagine you are at the vidjil root

update json output for 2014.10.10 format