- 08 Jul, 2016 7 commits
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HERBERT Ryan authored
Removed a permission check on patient logging which was not only redundant but also introduced a bug
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Mikaël Salson authored
When the seg[key] is not an object, we convert it to an object such as seg[key] = {'val': value}. e-values were stored that way (without object).
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Mikaël Salson authored
As Clone can be built independently it is important that convertSeg is called directly in the Clone constructor and not afterwards in the model.
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Mikaël Salson authored
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Mikaël Salson authored
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Mikaël Salson authored
As code is duplicated between the edit form and the add form, this is the same code as efc4589
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- 07 Jul, 2016 10 commits
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Mikaël Salson authored
Who said watir tests are useless? Two unexpected bugs have been caught by making this test (see the two previous commits). There definitely should be a watir test on the monitor report.
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Mikaël Salson authored
For instance in offline mode (with old files?). Make sure the code will still work
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Mikaël Salson authored
By generating a scatterplot for each locus, the last locus may not be the current one. Therefore, at the end, we explicitly the current locus to the former one.
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Mikaël Salson authored
A typo (a misplaced ]) gave an undefined value which JS didn't complain about. Therefore for N2, the sequence was retrieved until the end (thus including the J).
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Mikaël Salson authored
It will allow to watir-test it more easily
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Mikaël Salson authored
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Mikaël Salson authored
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HERBERT Ryan authored
Added patient and run names as well as usernames in log views
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HERBERT Ryan authored
Moved software and parameters to the end of the sample log
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HERBERT Ryan authored
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- 06 Jul, 2016 8 commits
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Mathieu Giraud authored
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Mathieu Giraud authored
There was an inconsistency in the specification: "stop" was used several times, and "end" once.
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
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Mathieu Giraud authored
We should follow format-analysis.org specification: "Positions on the sequence start at 1." Note that these tests were introduced in 745b47db (Feb 2016), but, at this time, we did not check these positions.
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Mathieu Giraud authored
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HERBERT Ryan authored
Resolved an issue where samples would not be displayed in the global compare view if the sequence file involved was present in multiple sample_sets (patient + run)
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- 05 Jul, 2016 9 commits
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HERBERT Ryan authored
Resolved an issue where attempting to remove a file from a patient or run which was attached to a patient or run that was previously deleted could cause a server error when checking permissions
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HERBERT Ryan authored
Resolved some issues with the new queries which would systematically cause a server error
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Mikaël Salson authored
This allows to know where we come from and therefore where we must redirect to.
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HERBERT Ryan authored
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Mikaël Salson authored
It was not provided to the file/edit.html view which needs them to display help on each pre-process.
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Mikaël Salson authored
This two views (file/add.html and file/edit.html) should definitely be merged. The form has been renamed as for file/add.html. Fix 6d28e261
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HERBERT Ryan authored
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HERBERT Ryan authored
Added button to compare sample_set view in run list
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HERBERT Ryan authored
Fixed an issue where runs did not appear in the compare sample view and one could not compare samples of a run
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- 04 Jul, 2016 1 commit
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Mikaël Salson authored
On some browser (at least Chrome 42) this may totally fail the filter() function which breaks the autocomplete feature.
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- 01 Jul, 2016 1 commit
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HERBERT Ryan authored
This is some documentation on how groups and users work inside the permissions system. It also includes a procedure to follow when creating an organisation with multiple roles
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- 30 Jun, 2016 4 commits
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HERBERT Ryan authored
Fixed an issue with the calculation of associated_id when deleting sequence files.
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HERBERT Ryan authored
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Mathieu Giraud authored
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HERBERT Ryan authored
Added some packaging documentation. It contains instructions to create a debian standards compliant package of a vidjil release version (so only the algorithm part)
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